Fusarium oxysporum: FOXG_11339
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Entry
FOXG_11339 CDS
T04882
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
fox
Fusarium oxysporum
Pathway
fox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOXG_11339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fox03019
]
FOXG_11339
03041 Spliceosome [BR:
fox03041
]
FOXG_11339
Messenger RNA biogenesis [BR:
fox03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
FOXG_11339
Spliceosome [BR:
fox03041
]
Complex B
Other components
Prp19-related factors
FOXG_11339
Complex C
FOXG_11339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
RPN7
ARM_TT21
AFF4_CHD
Motif
Other DBs
NCBI-GeneID:
28952749
NCBI-ProteinID:
XP_018249498
UniProt:
A0A0J9VK47
LinkDB
All DBs
Position
10:1154827..1159472
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AA seq
822 aa
AA seq
DB search
MAPIDHALHGARRQPQLHLVSNEDSVYEQDILRDPGSVKPWLAYIEFKTHHGTILEQTYV
MERACAQLPRSYKLWKLYLSFRLKHVAKLNPALFAAEYRKVNALFEKALNLLHKMPRIWE
MYLKFLTKQPLVTLTRRTFDRALRALPISQHNRIWAFYRPFANSAAGETAVKIWRRYMQV
HPEDAEDFIELLTQTGLYTEAALKFIDVLNNARFNSKHGKGHYELWSEMVDLIVEHAAEI
ETGYENGIDAERIIRSGISRFADQRGKLWSGLATYWIRRGSFERARDVFEEGITTVMTVR
DFTLIFEAYTEFEESIIGALMEVTSARAEKGIEDENADFELDIRMMRFEQLMDRRPFLLN
DVLLRQNPNNVPEWEKRVALWGDNKKEVAQTYTDAIAAIQPKRAVGAFHQLWANYAKFYE
RGGDLRNARVIMEKAIKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRS
TVDYFDETLSPQQRVHKSWKLWSFYVDLVESVSTLDETKKVYERIFELRIATPQTVVNYA
NLLEEHKYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAVEDC
PPKFAKTIYLMYGNLEEERGLARHAMRIYERATRAVADEDQADMFNFYITKSASNFGLTS
TRPIYERAIAALPDVEAKDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPDFWTKW
EQFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQRRPGGADDAEITDAMAA
LERQSRAPQGFVAASTGPVGGTPATTAVTSNPDAIEIDGIDE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggctccgatcgatcacgctctacacggggcgcgcagacagccgcaactgcatctcgta
tccaacgaggattccgtttatgagcaagatatccttcgcgatcctggtagtgtgaagccc
tggctggcatacattgagttcaaaacacatcacggtaccatccttgagcagacgtacgtg
atggagcgggcttgtgctcaattgccgcgttcatacaaattatggaaactgtatctctcg
tttcgacttaagcacgttgccaagttgaatccagcattattcgccgcagaatatcgcaaa
gtcaacgcccttttcgaaaaggccctcaatctactacacaagatgccacggatatgggaa
atgtacctcaaattcctgacgaaacaaccgcttgttactctcacccgacggacattcgac
cgagctctaagagctcttcccatatctcagcacaatcgtatttgggccttctatcgccca
ttcgcgaactcggccgctggcgaaactgctgtgaaaatttggcgacgctatatgcaggtg
catcctgaagacgcagaggactttatcgaactacttactcaaacggggctttatacagag
gccgcgctgaaatttatagatgttcttaacaacgccaggttcaacagcaagcatgggaaa
ggccattacgaactctggagcgaaatggtagatcttattgttgaacacgccgccgaaatc
gagacaggatacgaaaatggcattgacgccgaacgtataatccgaagtggtatttccaga
tttgccgatcaaagagggaagctatggtcaggtctcgctacttattggatccggagaggc
agctttgaacgggctcgcgatgtctttgaagagggaatcaccacggtcatgacagtgaga
gacttcacccttatcttcgaggcttacaccgaatttgaggagtctatcatcggtgccctc
atggaggttacgtctgcaagggccgagaaagggatagaagacgaaaacgcggactttgag
ctggatatcagaatgatgcgctttgaacaactcatggacagacgacccttcctcctaaac
gacgtcctgctacgccagaatccaaacaacgttccagagtgggaaaagagagttgccctt
tggggcgacaacaagaaggaggttgctcagacgtacacggatgcaattgcggcaatacag
ccgaaacgtgctgttggggcatttcatcagctctgggccaactacgcaaagttttatgaa
cgcggaggtgacctgagaaacgcccgggtcatcatggagaaggcgatcaaggtgcccttc
aagtcagtggcagagcttgctgatatgtggattgaatgggcagaaatggaattacgaaat
gagaacttcgacgacgccgtccggatcatggccaaagcagttcaggcaccaaagcggtct
actgtggactatttcgacgagaccttgtcaccgcaacaaagagtccacaagagctggaaa
ctctggagcttctacgtcgatctcgttgaaagcgtgtctactttggatgagaccaaaaag
gtttatgaacgaatctttgagctccggattgcaacacctcagacggttgtaaactatgcc
aatttgctcgaggagcacaaatattatgaggaatcgttcaagatttatgagcgtggctta
gacctattcagctatcctgttgcttttgagctttggaacttgtatcttaccaaggccgtt
gatcggaagatcgggatagaacgacttcgcgatctattcgagcaagccgtggaagattgc
cccccgaaattcgcaaagacgatctacctcatgtatggcaacttggaagaggaacgtggc
ctagcgcggcatgcaatgcgaatttacgagcgggccacacgagcagttgcggacgaagac
caggctgacatgttcaacttctatatcaccaaatctgcctccaatttcggcctgacgtcg
accagaccaatttacgagagggccatcgctgctcttccagatgtcgaagctaaggacatg
tgcctcaaatttgcggacatggagaagaggctgggtgagattgaccgggctcgcgccatc
tatggccatgcatcgcagttctgtgaccctcgcacaaaccctgacttctggacgaaatgg
gagcagttcgaagtgcagcacggtaacgaagatacatttaaagaaatgttacgaatcaag
cgaagtgttcaggcgcaatacaacacggacgtcaattttattgcatcccaagccctcgca
cgcagccaacgtcgtccgggaggggcagacgatgccgagataacggatgccatggcggca
ctggagaggcagtccagagcaccgcaaggattcgtggcagccagtactggtccagttgga
ggcacaccagctacaacggcagtcacttcaaatcccgacgccattgagattgatggcatt
gatgaatga
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