Fusarium oxysporum: FOXG_12684
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Entry
FOXG_12684 CDS
T04882
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fox
Fusarium oxysporum
Pathway
fox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOXG_12684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fox03041
]
FOXG_12684
03009 Ribosome biogenesis [BR:
fox03009
]
FOXG_12684
Enzymes [BR:
fox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOXG_12684
Spliceosome [BR:
fox03041
]
Complex A
U2 snRNP components
U2 related factors
FOXG_12684
Complex B
FOXG_12684
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
FOXG_12684
Ribosome biogenesis [BR:
fox03009
]
Eukaryotic type
90S particles
Helicases
FOXG_12684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
SRP54
AAA_19
T2SSE
AAA
NB-ARC
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
28953989
NCBI-ProteinID:
XP_018251045
UniProt:
A0A0J9VQQ2
LinkDB
All DBs
Position
9:2112592..2116767
Genome browser
AA seq
766 aa
AA seq
DB search
MSDIKGGKRSSADADESTRKKAKKDGEDEKYNPYLAHMYDNGNSNGYGAEPSPDSPLAGM
KRQHTTAAQASKAEDSESNPFTGRPHSQKYFQILQGRRDLPVHKQRQEFLDKYHSTQILV
FVGETGSGKTTQIPQYVVYDELPHLTGKLIACTQPRRVAAMSVAQRVADEMDVTLGEEVG
YSIRFEDMTGPKTMLKYMTDGMLLREAMHDHEMSRYSCIILDEAHERTLATDILMALLKQ
ISMRRPDLKIIIMSATLDAQKFQKYFNDAPLLAVPGRTHPVEIFYTPEPERDYVEAAIRT
VLQIHASEPEGDILLFLTGEDEIEDACRKISLEADELMREVDAGPLAVYPLYGTLPPHQQ
QRIFDKAPAPIRKGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESL
LVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAFKKELIEQTYPEILRSNLANTVLELKK
LGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTTLGSMASAFPLDPALAVMLI
SSPEFYCSNEILSITSLLSVPQIFTRPANNRKRADEMKAQFAHPDGDHLTLLNAYHAFKG
QATSDPNSAKQWCHEHFLSFRHLSSADNVRAQLKRIMETHGLELVSTPFEDKNYYTNIRR
ALLAGFFMQVAMKESSGKLYRTVKDDQAVLIHPSTVLRTEFDWVLYNEFVLTSKQYIRTC
TGIRPEWLLEIAPTYYDIDSFEQGDVKRSLARAAEKKRRKEAMKAG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatatcaagggaggaaagcgttcaagcgccgacgccgacgaatccacgcgaaag
aaggccaagaaggacggtgaggacgagaaatacaacccttacctcgctcacatgtacgac
aacggtaacagcaatggttatggcgcagagccttcgccagactctcctctcgctggtatg
aagaggcagcatactaccgctgcccaggcctcaaaagctgaggactctgagtcgaaccct
ttcactggccggcctcattcgcaaaagtacttccaaattctccagggccgtcgcgatctg
cctgtccacaagcaacgacaagagtttttggacaagtaccactcaacacagattctcgtc
tttgtcggtgagacaggttctggaaagactactcaaattcctcagtatgtcgtctacgac
gagctaccgcatcttaccggcaagcttatcgcctgtacccagccacgtcgagtcgccgcc
atgtcggtcgcgcagcgtgtcgccgacgagatggacgtcaccctgggcgaggaagttggt
tacagcattcgtttcgaggacatgacaggtcctaagacaatgcttaagtacatgactgat
ggtatgcttctgcgtgaggccatgcacgaccacgagatgtctcgctacagttgtattatt
ctcgatgaggctcacgaacgtactctcgcgaccgatattctcatggctctactcaagcag
atttctatgcgccgccccgacctcaagatcatcatcatgtctgctaccctcgatgctcaa
aagttccaaaagtatttcaacgatgcgcccctgctcgccgtccccggtcgaacacatcct
gtcgagatcttctacacccccgagcctgagcgcgattacgtcgaggctgccataagaacc
gttctccagattcacgcttcagagcctgagggtgatattttgcttttccttacaggtgaa
gacgagattgaggacgcttgtcgcaagatcagtctcgaggctgatgagctgatgcgcgag
gtcgacgctggtcctctcgccgtttaccctctgtacggtaccctgcctccccaccagcaa
cagcgcatcttcgacaaggcccctgcgcctattcgcaagggcggtcgtcctggtcgcaag
gtcattgtttctaccaatattgccgaaactagtttgactatcgacggtatcgtctatgtc
gtggatcccgggtttagcaagcagaagatctacaaccctcgtatccgtgttgagtctctc
cttgtctcacccatctccaaggcttcagcccagcagcgtgctggtcgtgctggtcgtacc
aagcccggaaagtgtttccgtctgtacaccgagaaggccttcaagaaggagcttattgag
caaacatatcccgagattctgcgctccaacctcgccaacaccgttctggagctcaagaag
cttggtgtggaggatcttgtccacttcgatcttatggacccccctgctcccgagaccatg
atgcgcgcccttgaggagctcaactatcttgcctgtctggacgacgatggtgagctgacc
actctcggcagcatggcctcagcattcccccttgatcccgctctggcggtcatgcttatc
tcgtctcccgagttctactgctcgaacgagattctctctattacctcgcttctctcagtt
cctcaaatcttcactcgccctgccaacaaccgaaagcgcgccgatgagatgaaggctcaa
tttgcgcatcctgatggtgaccacctcaccctgctcaacgcctatcacgctttcaagggc
caggcaacatccgaccccaacagtgcaaagcagtggtgccacgagcatttcctctccttc
cgacatctctcgagtgcggataacgttcgcgctcagctcaagcgcatcatggagacgcac
ggcctggagcttgtgtcaacaccgtttgaggacaagaactactataccaacattcgacgc
gcactgctcgccggtttcttcatgcaggtcgccatgaaggagagctctggcaagctctat
cgcactgtcaaggacgaccaggctgtgctgattcacccttcaactgtcctccgtaccgag
ttcgactgggtcctctacaacgagtttgtcttgacgtccaagcaatacatccgaacatgt
acgggtatccgacctgagtggctgttggaaattgcccctacgtactacgatatcgacagc
tttgagcaaggcgacgtcaagcgttctctcgcacgcgctgcagaaaagaagcgccgcaag
gaagccatgaaggctggttga
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