KEGG   Fusarium oxysporum: FOXG_17946
Entry
FOXG_17946        CDS       T04882                                 
Name
(RefSeq) endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
fox  Fusarium oxysporum
Pathway
fox03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fox00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    FOXG_17946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fox03021]
    FOXG_17946
   03019 Messenger RNA biogenesis [BR:fox03019]
    FOXG_17946
Transcription machinery [BR:fox03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     FOXG_17946
Messenger RNA biogenesis [BR:fox03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     FOXG_17946
    U7-dependent histone pre-mRNA processing factors
     FOXG_17946
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 28958652
NCBI-ProteinID: XP_018233065
UniProt: A0A0J9U7R2
LinkDB
Position
1:complement(4046970..4050539)
AA seq 832 aa
MASKRKASAMNAAAAEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALM
KSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQ
TYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASP
GMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMTRSMAGARRLP
GGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLS
LNANKTAKVKVYSPRNCEELRIPFKADKTAKVVGKLASVQPPQSIHPDQSAAPPLVTGVL
VQNDFKLSLMAPEDLREYAGLNTTTITCKQRLTLSAAGVDLVKWALEGTFGNIEELPEMR
RGKNGQSNGHGDHMITDGEEMKQEDADEEVASLVAAYLVMGCVSVRYRTNGEVELEWEGN
MLNDGIADSVMAVLFSVESSPAAVKRSSAKHSHSHELPDVNPHHSASPEERLERLLWFLE
AQFGQDNVAPVTIPKLPAVEDTEEKIKKDEADDAMKTEGDGEDTQLQERQQKEIDRLHKI
GIPVPGVSIKVDRMNATVWLEDLEVESNNKVFADRVRAVVERAVEVTAPLWG
NT seq 2499 nt   +upstreamnt  +downstreamnt
atggcatccaaacgaaaggcttctgccatgaacgcggctgcggcggaagagccagtagat
ccttcagatgaacttatgtttctttgcctgggaggaggaaacgaagtgggaaggtcatgt
catattattcaatacaagggaaagacggtcatgcttgatgccggccaacatcccgcatac
gatggactcgctgcactgcccttctacgacgatttcgatcttagcactgtcgacgtgctt
ctcatcagccattttcacatcgaccatgcagcatcgttaccatatgttctcgcaaagacg
aacttcaggggtcgtgtctttatgacccatcccacaaaggccatctacaagtggcttatt
caggacagtgttcgagtgggcaatacttcatccaatcctactacacagccagtgtatact
gagcaagaccatctaaacacatttcctcagatcgaggccatcgactaccacacaactcat
actatctcctccatcagaatcaccccttaccctgccggccatgttcttggtgctgccatg
ttccttatcgagattgctggcctcaacatcttcttcacaggtgactactctcgcgaacaa
gatcgacatttggtctcagcagaggttcctaagggcgtcaagattgacgttcttatcacc
gaatccacctacggcattgcttctcatgtccctcgcctcgagagagaacaggcccttatg
aagtccatcacaagtatcctcaaccgaggcggccgtgtcctcatgccagtctttgccctc
ggacgagctcaggagctactcttgattctcgacgagtactggggcaagcatgctgacttc
cagaagtaccccatctactatgccagcaaccttgccaggaagtgtatgctcatctaccag
acctacgttggtgccatgaacgacaatatcaaacgcttgttccgtgagcgaatggccgag
gcagaggcgtctggcgatggagctggtaagggtggaccgtgggactttaagtacatccgc
tctctcaagaacttggacaggttcgacgatgttggcggttgtgttatgcttgccagtcct
ggtatgcttcagaatggtgtcagtcgtgagctactagaacggtgggcgcccagcgagaag
aatggtgtgatcatcacgggttacagcgtcgaaggcacaatggctaagcagatcatgcaa
gaacctgatcagatccaggcagttatgactcgtagtatggcgggcgctcgtcgactgccc
ggaggagatggcgagaaagtcctcattcctcgaaggtgtagtgtccaggaatactctttc
gcggctcacgtcgatggcgttgagaaccgtgaatttatcgaagaagttgcagctcctgtc
gttattcttgttcatggcgaacagcacaacatgatgcgtctcaaatccaaactcctctcc
ctcaacgcaaacaaaactgcaaaggtcaaagtctactcaccccgcaactgtgaagagctt
cgtatccccttcaaagccgacaagactgccaaggttgttggaaaacttgcgtcggtccag
cctcctcagagcattcatcctgatcaaagtgctgcacctcctctcgttactggcgtgctc
gtccagaacgacttcaagctttctctcatggcgcccgaggatctccgcgagtacgcaggc
ctaaacacaaccaccatcacctgcaagcagcgtctgaccctcagtgctgcaggtgtcgac
ctcgtcaagtgggccctcgagggcacgtttggcaacatcgaagaactccccgagatgcgc
cgtggaaagaatggtcaaagcaatggacatggcgatcatatgatcacggatggcgaggaa
atgaagcaggaggatgctgatgaagaggttgctagcctcgttgcagcttacctcgtcatg
ggatgtgtctcagtccgataccgcacaaacggtgaggttgagcttgagtgggagggcaat
atgctcaacgacggcatcgccgactccgtcatggctgttctcttctccgtggagagttct
cctgctgctgtcaagcgctcctccgctaagcactcacactcgcacgagctacccgatgtg
aaccctcaccactctgcttccccagaggagcgccttgagcgtcttctttggttcctcgaa
gctcagttcggtcaagacaacgttgccccagtcacgatccccaaactaccagccgtggag
gacaccgaagagaagatcaagaaggacgaggccgatgatgccatgaagacagagggggat
ggtgaggatacacaactccaggagagacaacagaaggagattgacaggctgcacaagatt
ggtattcctgtgccaggagtgtcaatcaaggtggataggatgaatgccacggtttggttg
gaagacctcgaggttgagtctaacaataaggtttttgcagacagggtgagggcagtggtg
gagagagctgtcgaggtgacggcacctctttggggataa

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