Fusarium oxysporum: FOXG_18225
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Entry
FOXG_18225 CDS
T04882
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
fox
Fusarium oxysporum
Pathway
fox03018
RNA degradation
fox03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fox00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOXG_18225
09123 Folding, sorting and degradation
03018 RNA degradation
FOXG_18225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fox03019
]
FOXG_18225
03041 Spliceosome [BR:
fox03041
]
FOXG_18225
Messenger RNA biogenesis [BR:
fox03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOXG_18225
mRNA degradation factors
5'-3' decay
Lsm complex
FOXG_18225
Spliceosome [BR:
fox03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FOXG_18225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
28958931
NCBI-ProteinID:
XP_018235231
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All DBs
Position
5:2871296..2872336
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AA seq
83 aa
AA seq
DB search
MASQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNHTKLP
KILLNGNNICMLIPGGEGPEGAA
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccaactgttacctctcgagcttatcgacaagtgtgtgggctccaggatttgg
gtcattatgaagggcgataaggaattcagcggaactctcgtcggttttgacgactacgtt
aacatggttctggaggatgtgaccgagtttgactactcgggtaaccacactaaacttccc
aagattctgctgaacggcaacaacatctgcatgttgatccccggtggtgaaggtccagaa
ggagctgcttga
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