Flavobacterium pallidum: HYN49_06665
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Entry
HYN49_06665 CDS
T06077
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpal
Flavobacterium pallidum
Pathway
fpal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN49_06665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpal03021
]
HYN49_06665 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpal03400
]
HYN49_06665 (rpoC)
Enzymes [BR:
fpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN49_06665 (rpoC)
Transcription machinery [BR:
fpal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN49_06665 (rpoC)
DNA repair and recombination proteins [BR:
fpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN49_06665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AWI25604
UniProt:
A0A2S1SGR5
LinkDB
All DBs
Position
complement(1662848..1667161)
Genome browser
AA seq
1437 aa
AA seq
DB search
MMNNRNNNNKDKNQIKRFDKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCE
RIFGPVKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRS
LPNKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNAEGDEVKRLDFLTEEEYLNILDSLP
QENQYLDDNDPNKFIAKMGAECIMDLLARIDLDSLSYDLRHSANNETSKQRKTEALKRLQ
VVESFRESNLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNR
LKRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRF
RQNLLGKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAK
KIIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFN
ADFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERL
STPEMKILGEGLTFYSAEEVNIALNEGRLELNARVKIRAKDFNENGELVWKIIQTTAGRV
LFNEVVPEAAGYINDVLTKKNLRDIIGHILSVTNVPTTAAFLDEMKDMGYKFAFKGGLSF
SLGDIRIPEQKGKLIADANEQVDGILMNYNMGLITNNERYNQVIDIWTSANAQLTELAMK
NIREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFK
EGLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNLDDCGTLRGVEVSA
LKKNEEIVESLGERILGRVALQDVINPLTNEIIIEAGKQITENVMRVIEASPIERVEVRS
PLTCEAIKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGI
SEESSIVVRFNGRLEIEDLKTVKGEDNEGNTVDIVVSRSTELKLIDEKTGIVLNTHNIPY
GSSIFVKDGQSVKKGDVICKWDPYNGVIISEFTGKIAYEDLEQGQSFVVEIDEQTGFQEK
VISEGRNKKLIPTLLIYGKDNELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKAG
DITGGLPRITELLEARNPSNPAVVSEIDGVVTFGKIKRGNREIIIESKFGEIKKYLVKLS
SQILVQENDFIRAGVPLSDGAITPEDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHF
EVVIRQMMRKVQVQDPGDTLFLEDQLIHTKDFIVENDKLYGMKVVEDAGDSDTLKPGQIV
SPRQLRDENSILKRTDKNLVSARDVITATATPVLQGITRASLQTKSFISAASFQETTKVL
NEAAVAGKVDLLEGLKENVIVGHRIPAGTGMREYDHTIVGSKEDFNEMMATKEEYNY
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataataacaataaggacaaaaaccaaataaaaaggtttgacaaa
atttctatcggtcttgcttctccggaatctatcctggcggaatcaaggggtgaagtctta
aagcctgaaacaatcaactacaggacgcacaagccggaacgcgacggtcttttctgtgaa
aggatcttcggacctgtaaaggatttcgaatgtgcctgtggtaaatataaaaggatccgt
tacaaaggcatcgtctgcgaccgctgcggtgttgaagtaaccgagaaaaaagtacgtcgt
gaccgtgtcgggcatatcaaccttgtcgtgcccatcgcacacatctggtatttccgttcg
cttccgaataaaatcggatacatccttggattgccgtctaaaaaattagacatgatcatt
tactacgaaagatacgtggtgatccaggctggtattgcaaaaaatgccgaaggtgatgaa
gtgaagagattggactttttgaccgaagaagaatacctgaacattctggacagccttcct
caggaaaaccaatatcttgacgacaatgaccctaataaatttatcgccaaaatgggtgct
gaatgtattatggacctgttagcaaggattgatctggacagtctgtcttacgacttgcgc
cacagtgccaacaacgaaacgtcgaaacaacgtaaaacagaggctttaaaaagattacag
gttgtggaatctttccgcgaatcaaacctcaatcgtgagaaccgtccggaatggatgatc
atgaaagtggttcctgttatcccgcctgaattgcgtccgttagtgccgcttgatggtggc
cgtttcgcaacgtcggatttgaacgacctttaccgtcgtgtgattatccgtaacaatcgt
ttgaagcgtctgatggagatcaaagctcctgaagtgatccttcgtaacgaaaagcgtatg
ttgcaggaatcggtagattctttgttcgataacacgagaaaggcttctgccgttaagaca
gaatcaaaccgtccattgaaatcgctttctgattcccttaagggaaaacaagggcgtttc
cgtcagaacttgcttggaaaacgtgtcgattattctgcgcgttcggtgatcgtcgttgga
ccggaattgaaattattcgaatgcggtctgccaaaagacatggctgctgaactttacaaa
cctttcgttatccgtaagcttatcgaaagaggtattgtaaaaacggtaaaatctgccaag
aaaatcatcgataagaaagagcctgtagtttgggatatccttgaaaatgtaatcaaagga
caccctgtattgcttaaccgtgctcctaccctgcaccgtctgggtatccaggcgttccag
ccgaaactgattgaaggaaaagcgatccagcttcacccattggtttgtacggctttcaac
gcggatttcgatggtgaccagatggcggttcacttgccacttggacctgaagcgatcctt
gaagcgcagcttttgatgctggcatcacacaacatcctgaaccctgcgaatggcgcaccg
attacggttccttcccaggacatggttttgggtctgtattatatgaccaaagaaagattg
tcgactccggaaatgaaaatcttaggcgaaggcctgactttctattctgcagaagaagta
aatatcgccttgaacgaaggccgtctggaattgaacgcaagagtgaaaatccgtgcgaaa
gatttcaacgaaaacggagaattggtttggaaaatcatccagaccactgcaggacgtgta
ctgtttaatgaagtagttcctgaagcagcaggatatatcaatgacgttttgaccaagaag
aacctgcgtgatatcatcggacacatcttaagtgtgaccaatgtaccaaccactgccgct
ttccttgacgaaatgaaagacatgggttacaaattcgcattcaaaggcggattgtcattc
agtttgggtgatatccgtattccggagcaaaaaggaaaactgatcgccgatgccaatgag
caggttgatggtatccttatgaactataacatgggtcttatcaccaataacgagcgttat
aaccaggttattgacatctggacttcggcgaatgcacagcttactgaattggcgatgaaa
aatatccgtgaagaccagcaagggtttaactcggtatacatgatgcttgattcaggagcg
aggggttccaaagagcagatccgtcagcttacaggtatgcgtggtttgatggccaagcct
aagaaatctactgccggtggtggtgagattatcgaaaacccgatcctttctaactttaag
gaaggtctttcgatccttgaatacttcatctctacgcacggtgcccgtaaaggtcttgcc
gataccgctttgaagactgcggatgccggttaccttaccagaaggctccatgacgtttcc
caggatgttatcgtaaatcttgacgattgcggtacattgaggggtgttgaagtttcagca
ttgaaaaagaacgaagaaatagtggaatcgttgggagaaaggatccttggccgtgtggct
ttacaggatgtcatcaacccattgaccaacgaaatcatcatcgaagccggtaagcagatt
actgaaaacgtgatgagggttatcgaagcgtctccaatcgaaagagtggaagtacgttct
ccattgacttgtgaagctatcaaaggaatctgtgctaaatgttacggaaggaaccttgct
acaggtaagatgacacaacgtggagaagctgtcggtgtaatcgctgctcaatccatcggt
gaacctggaactcagctgacacttcgtacattccacgtaggtggtgtggccggaggaatc
tctgaagaatccagcatcgtagtacgtttcaacggtcgtcttgagattgaagatcttaaa
acggtgaaaggtgaagacaacgaaggcaataccgtagacatcgtggtgtcacgttctacc
gaattgaaactgatcgacgagaagacaggaattgtcttgaatacacataacatcccttac
ggttcaagcattttcgtaaaagacggacagtctgttaagaaaggcgacgtaatctgtaaa
tgggatccatataacggggttattatttctgaatttaccggaaaaattgcttacgaagat
ttggaacagggacaatcgttcgttgttgagattgatgagcagaccggattccaggaaaaa
gtaatttctgaaggaaggaacaaaaaactgatccctaccttattgatctacggaaaagac
aatgaactgattcgttcttataacttaccggttggtgcacaccttatggtagacgatggc
gagaagatcaaagctggaaaaatccttgtgaagattccgcgccgctcttcaaaagccggg
gatatcaccggaggtctgccaaggattacagagcttcttgaagcacgtaacccttcaaac
ccggcggtagtttctgaaatcgatggtgtggttacttttggaaaaatcaaacgtggtaac
cgcgagattatcatcgaatccaaatttggtgagattaagaaataccttgtcaaattatcg
agccagatcctggtgcaggaaaatgacttcatccgtgcgggtgtgccattgtctgacgga
gctattactcctgaagatatcctgagaatccagggacctgccgcggtacaacaatatctt
gtgaatgaaatccaggaagtgtaccgtctgcaaggggtaaaaatcaatgacaagcacttc
gaggtggttatccgccagatgatgcgtaaagtacaggtccaggatccgggagatacctta
ttccttgaagaccaattgattcatactaaagactttattgttgaaaatgataagctttac
ggtatgaaagtggtcgaggatgccggtgattctgacaccctgaaaccaggacagattgtt
tctccacgccaattgcgtgatgagaattctatcctgaaacgtacagataagaaccttgtt
tctgcacgtgacgtgatcactgcaacggctactccggtacttcagggtatcacaagggct
tcacttcagacgaagtcattcatctctgctgcgtcgttccaggaaactactaaagtacta
aacgaagctgctgtagcagggaaagtagatttattggaaggtcttaaggaaaatgtgatc
gtcggacaccgaatccctgccggaaccggtatgagggagtacgaccatacgatcgtaggt
tctaaagaggatttcaacgaaatgatggctactaaagaagaatacaactattaa
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integrated database retrieval system
