Flavobacterium pallidum: HYN49_09810
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Entry
HYN49_09810 CDS
T06077
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpal
Flavobacterium pallidum
Pathway
fpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN49_09810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpal03019
]
HYN49_09810
03009 Ribosome biogenesis [BR:
fpal03009
]
HYN49_09810
Enzymes [BR:
fpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN49_09810
Messenger RNA biogenesis [BR:
fpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN49_09810
Ribosome biogenesis [BR:
fpal03009
]
Prokaryotic type
rRNA helicases
HYN49_09810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
AWI26169
UniProt:
A0A2S1SII7
LinkDB
All DBs
Position
complement(2389776..2391686)
Genome browser
AA seq
636 aa
AA seq
DB search
MNKFEQLGLKESLNRAIIDLGFENPTEVQEKAIPMLLEQDTDLVALAQTGTGKTAAFGFP
LIHKIDADNRNTQALILSPTRELCLQITNEIKNYSKYEKGINVVAIYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNITQIDYCVLDEADEMLNMGFYEDIVSILSDTPEEKST
WLFSATMPAEVARIAKKFMENPIEITVGTKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQQVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISTIEKI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEGLTKEELIKKM
VSVEFNRFINYYKKTRDLSAQSAGKREEREPRESNGGAVRYFVNIGSRDDFDWMQLKDFL
KETLDLGRDDVYKVDVKEGFSFFNTDPEHTDKVMEILNNVTLGGRRINVEISKNDGGGRR
DHNGRSGGFGGDRGGRSFGGDRGGRSFGGDRSGKSFGGGFKSDKPSRFSSDKGGSNESKF
SRSETPRREGKFTSERAPRRSESFSDQSRPKRPRKD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaaagagtcgctgaaccgtgcgattatcgatctg
ggatttgagaatccgaccgaagtgcaggaaaaagcgattccaatgctattggaacaagac
accgatttagttgcgttagcccagacagggacagggaaaaccgcagcttttggctttccg
ctgatccataagatcgacgctgacaacagaaatacacaggcgttaatcttatcacctacc
cgcgaactttgtttgcagatcacaaacgagatcaagaattactcgaagtacgaaaaagga
atcaatgtcgtggccatctacggcggtgcaagtattaccgaacaggcacgcgaaatcaag
cgcggcgcgcagattatcgtggcgactccgggaaggatgcaggacatgatcaaccgcggg
ttggtcaatatcacacaaattgactattgcgtgctcgatgaggcagatgagatgctgaac
atgggcttttatgaagacatcgtttccatcttatccgacactcctgaggaaaaaagcacc
tggcttttctctgcgaccatgcctgccgaagtggcgcgcatcgcaaagaaattcatggag
aatccaattgaaatcactgtgggaacgaagaactctggttctgcaacagtttcgcatgaa
ttttaccttgtaaatgcacgtgaccgttatgaagctttaaaacgccttgccgatgcgaac
ccggacatcttttcagtggtattctgccgtacgaaaagggacacgcagcaggttgccgaa
aaactgattgaagatggttacaacgctgcggctttgcacggcgatttgtcacaggcacag
cgtgattctgtaatgaaatcattccggggaaggcaaatccagatgcttgtagctacagat
gttgcagcacgaggaatcgacgttgataatgtaacccacgtggtaaactaccagcttccg
gacgaaattgaaacctacaaccaccgttcgggaaggactgggcgtgccggtaaactgggg
acttctattgtgattgttaccaaaagtgaattgcgcaagatttctaccatcgaaaaaatc
atcaagcagaaatttgaagaaaagacaataccttccggaattgaaatctgcgaaatccag
cttttacaccttgccaataaaataaaggatactgaagttgatcacgaaatcgacaattat
cttccggccattaataatgtattggaagggcttaccaaagaagagctgatcaagaaaatg
gtgtcggtagaattcaaccgattcatcaattattataaaaagacacgcgacctttcagca
caatctgcagggaaacgcgaagagcgtgagccacgtgaaagcaatggcggcgcggtccgt
tatttcgtaaacatcggttcaagggatgatttcgactggatgcaattgaaggatttcctt
aaagaaacccttgatcttggacgcgacgatgtatacaaggtagatgtaaaagaaggattc
tccttcttcaacaccgatcctgaacataccgacaaagtgatggaaatcctgaacaatgtt
acccttggcgggcgacgcatcaatgtggaaatttctaaaaacgacggcggcggacgcagg
gaccacaacggaagaagtggtggattcggcggagaccgcggcggaaggagctttggcgga
gaccgtggtggcagaagtttcggtggcgaccgtagcggaaaaagcttcggtggcggattt
aaaagcgacaagccttccaggttttcatctgacaaaggcggaagcaatgaaagtaaattc
agccgttctgaaaccccgagacgtgaaggaaaattcacttcggaaagggcaccaaggcgt
tcagaaagcttcagcgaccagtcaaggccgaagcgtccgcgcaaggactaa
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