Flavobacterium panici: NLJ00_00735
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Entry
NLJ00_00735 CDS
T08520
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fpb
Flavobacterium panici
Pathway
fpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLJ00_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpb03019
]
NLJ00_00735
03400 DNA repair and recombination proteins [BR:
fpb03400
]
NLJ00_00735
Enzymes [BR:
fpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLJ00_00735
Messenger RNA biogenesis [BR:
fpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLJ00_00735
DNA repair and recombination proteins [BR:
fpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NLJ00_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
HTH_69
NirdL-like_HTH
DUF1949
HTH_9
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
UUF14644
LinkDB
All DBs
Position
156792..158687
Genome browser
AA seq
631 aa
AA seq
DB search
MQDAQEILLKYWKHQSFRPLQKEIIDSVLEGQDTFALLPTGGGKSICFQVPAMMQEGICL
VVSPLIALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQFGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKYFPKIPFLALTATATPRVV
EDIKTELGLKDTKLFQQSFERKNIAYMVFEVEDKLYRVEQILKKNPQPCIIYVRNRKSCL
NMSTQLQSLGFRATYYHGGLSAQEKDRNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENIENYYQESGRAGRNGEKSFSVLLFNNSDANQTEQQFISVLPDKTFLKTMYIKLC
NYFQIAYGEGLDDSYSFKMNHFCHKYDFPTLKTYNALQFLNQQGIITMSQEFSEKVSMQF
LIESKEVLRYMSLNPNDEEIILAILRTYPGIHEMKTPLNLSLIAKKSNHTEEQVTDLLEK
LKEKDIIEYKSKNNDATILFNEVREDDLTINRVAKYLEKQNKLKRDQLSSVLYYIKEDKT
CKNRLVLDYFGEETKSNCGVCSFCITQKGKITEADSIADKILHLLKATALTSREIQNQIK
LDAKDVIVVLQELLENNHIIILANNKYALKS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgcacaggaaattcttttaaaatactggaaacaccaaagtttccgaccgttg
caaaaagaaattattgattcggttttagaagggcaagacacttttgcactgctgccaacc
ggaggcggaaaatcgatttgttttcaggttccggcgatgatgcaagaaggaatttgtctg
gtagtttctcctttaattgcactgatgaaagatcaggtagcgaatcttcaaaaaagagaa
attaaagcaattgcgctaactggcggaattcataccgaagaaattattgatcttctggat
aactgccaattcggaaattataaattcctttatctttctccggagcgattacaatctgac
tggattttagaacgcatcaaaaatcttcctataaatttaattgctattgacgaagctcat
tgtgtttcgcaatggggccacgattttagacccgcttatttaaaaatttcagaacttaaa
aaatactttcctaaaattccgtttttggccttaaccgcaactgcaactccacgagttgtt
gaagatattaaaaccgaattgggattaaaagataccaaactttttcagcagtcttttgaa
agaaagaatattgcgtacatggtttttgaagtggaagacaaattgtatcgcgtggagcag
attttgaagaaaaatccgcagccatgtattatatatgtccgaaacagaaaatcatgttta
aacatgtcaacgcaattgcaatcgctgggatttagagcaacgtattatcacggtggactt
tcggctcaggaaaaagatagaaatatgcaattgtggatgtccgagcaggcgcaggttatt
gtagccaccaatgcgtttggaatgggaattgacaaggataatgttaaaacagttattcat
acgcaattgcccgaaaacatagaaaattattatcaggaatccggaagagcgggacgaaat
ggcgaaaaatcattttcggttttattatttaataattcagatgcaaatcaaacagaacag
cagtttataagtgttcttcctgataaaacgttcctgaaaacgatgtacattaaattgtgc
aattattttcaaattgcttatggcgaaggtttagacgattcgtattcttttaaaatgaat
catttttgtcataaatacgacttccctactttgaaaacgtataatgctttgcagtttttg
aatcaacaggggattattacgatgtctcaggaattttcagaaaaagtttccatgcagttt
ttaatcgaatcaaaagaagtacttcgatacatgagcctgaatccgaatgacgaagaaatt
attctggcgattttaagaacttatccaggaattcatgaaatgaaaacacctcttaatctt
tcgcttattgcaaaaaaatcaaatcataccgaagaacaggttactgatcttttagaaaaa
ttgaaagagaaagatatcattgaatacaaatcgaaaaacaacgacgctactattttattt
aatgaagtccgcgaagatgatttaactataaacagagttgctaaatatctggaaaaacag
aacaaactaaaacgcgatcagctttcatctgttctctattatataaaggaagacaaaaca
tgtaagaacagattggttttggattattttggagaagaaactaaatcgaattgcggcgtt
tgttctttctgtattactcaaaaaggaaaaattaccgaagcggattcaattgctgataaa
attcttcacttattaaaagcaactgcactaacttcgcgcgaaattcagaatcaaataaaa
ttagatgctaaagatgttattgtggttcttcaggaattactggaaaacaatcatatcatt
attttagccaataataaatacgctttaaaatcataa
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