Flavobacterium panici: NLJ00_03360
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Entry
NLJ00_03360 CDS
T08520
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpb
Flavobacterium panici
Pathway
fpb03410
Base excision repair
fpb03430
Mismatch repair
fpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NLJ00_03360 (recJ)
03430 Mismatch repair
NLJ00_03360 (recJ)
03440 Homologous recombination
NLJ00_03360 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpb03400
]
NLJ00_03360 (recJ)
DNA repair and recombination proteins [BR:
fpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NLJ00_03360 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NLJ00_03360 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLJ00_03360 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UUF15148
LinkDB
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Position
716220..717920
Genome browser
AA seq
566 aa
AA seq
DB search
MRWTIKPKPSEDKIKHLAQALNVEDFVATLLIQRGIDTFEDAKNFFRPSLEHLHDPYLMK
DMDKAVARIEKAIENQENILVFGDYDVDGTTAVSLVSSYLKSHYSHIATYIPDRYDEGYG
ISYKGIDYADDNGISLIIALDCGIKSIDHIAYAKAKNIDFIICDHHRPGEFLPDAVAILD
PKREDCSYPYDELCGCGVGFKLIQALGLNRNETIEDLVPYLDLVATAIAADIVPITGENR
VLAYFGLKVINSEPRPGIKALVHQVKKKVLDITDVVFIISPRINAAGRIKHGNHAVELLT
EFDFEQAQQFASEIEQYNADRKDLDKKITKEAFQQILENKEEERFSTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKYAASARSVKGFDVYNALDACSQHLEQFGGHMYAAGMT
LKAENYQLFKEAFEKCVQETILPEMRTPEIEIDSEINFSDITPKLIRILKQFEPFGPQNM
TPVFMTSDIKDTGYAKTLGAEEEHLRLFVKQSNSDGIAAIGFGLGKKLNIAQNQNLFQLA
YTIAENEWNGTISTQLMLKDIRTNDN
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaccataaaaccaaaaccttctgaagataaaatcaaacatttggcgcaagcc
ctaaatgtagaagattttgtagcaacacttttgattcagcgtggcattgatacttttgaa
gatgccaagaatttctttcgtccgtctttagaacatcttcacgatccatacttgatgaag
gatatggacaaagccgttgcaagaatagaaaaggcaatcgaaaatcaggaaaacatatta
gtttttggcgattacgatgttgacggaacaacggctgtttctttagtttcctcctattta
aaatcacattattcccatattgccacttacattccagatcgctatgacgaaggatatggc
atttcctacaaaggaattgactatgcagacgataatgggatttctttaatcattgcgctc
gactgcggaataaaatcaatcgatcatatcgcttatgcgaaagcaaaaaatatagatttt
attatttgcgatcaccacagacccggggaatttcttccggatgcggttgcaattttagat
ccaaaaagagaagactgttcctatccttacgacgaattatgcggttgcggcgttggtttt
aaattgattcaggctttaggtctaaacagaaatgaaactatcgaagatttggttccctat
ctggatttagttgctacggcaattgcggcagatattgttccgataactggcgaaaatcgt
gttctcgcttatttcggtttgaaagtaattaatagcgaaccaagacctggaattaaagct
ctggttcatcaggtaaaaaagaaagttttagatattaccgatgtggtttttattatttct
ccccgaattaatgcggcaggaagaataaaacatggaaatcatgcggttgaattattaacc
gaatttgattttgagcaagcgcagcaattcgcttcagaaattgaacaatacaacgcagac
cgaaaagatttagataaaaaaatcaccaaagaagcatttcagcaaattctggaaaataaa
gaagaagaacgtttttctacagttgtttttcaagaagactggcacaaaggcgtgattggg
attgtggcttcgagattaattgaaacctattatcgtccgactttggtttttactaaaagc
ggagacaaatatgcggcttctgcccgatctgtaaaaggatttgatgtttataatgcactc
gatgcttgttcccaacatttggaacaatttggaggtcatatgtatgccgcgggaatgact
ttaaaagcagaaaattatcagctttttaaagaggcttttgagaaatgtgtacaggaaact
attttaccggaaatgcgaactccggaaatcgaaattgattctgaaataaatttctcagat
attacaccaaaactcatccggattttaaagcaattcgagccttttggtccgcagaatatg
acgccggtttttatgacttcagatataaaagatacgggttatgctaaaacactgggcgct
gaagaagaacatttaagacttttcgttaaacaatctaattccgacggaattgctgctatt
ggcttcggactcggaaaaaaactcaatatagcacaaaatcaaaatctgtttcaattggct
tatacaattgccgaaaacgaatggaacggaactatttcaacacagcttatgctgaaagac
attagaacaaatgacaactaa
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