Flavobacterium panici: NLJ00_05480
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Entry
NLJ00_05480 CDS
T08520
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fpb
Flavobacterium panici
Pathway
fpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLJ00_05480 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpb03019
]
NLJ00_05480 (rnr)
03016 Transfer RNA biogenesis [BR:
fpb03016
]
NLJ00_05480 (rnr)
Enzymes [BR:
fpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NLJ00_05480 (rnr)
Messenger RNA biogenesis [BR:
fpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NLJ00_05480 (rnr)
Transfer RNA biogenesis [BR:
fpb03016
]
Prokaryotic type
tRNA degradation factors
NLJ00_05480 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
WHD_TBPIP
DUF5604
DUF7430
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UUF15565
LinkDB
All DBs
Position
complement(1225582..1227762)
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKIRKPIKKEKDFSGKILKILSQNANKPFNYKQIGAKLELDDTNSRNQIIKDLKILAA
QKKIVETEPGKYLVKAISQDYYEGTIDMTSRKTAYFICDEFEEDVFIPTNNLNRALDKDK
VKVYVYNRRKGKRPEGEVIEVIERDKTEFVGVIDIQANFAFVSTANPKMYTDIFIPKDKI
GEAENGDVVLVKIDDWPKRADSPFGSVIRVLGKPGEHNTEIHAILAEYGLPSDFPVEVEV
FAQKLDTSIQESEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNFEIGIHIADVS
YYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAVFEVSPAS
QVINQWFGRTVIYSDQRFAYEEAQYIIETKDNTIPVDISITGESYVVSDEIVEATLKLDE
LAKILRKKRMQNGAISFDKVEVKFNLNEEGEPEGVYFKISKDANHLIEEFMLLANRKVAE
YIGKQKKTFVYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDIAKSLNSLMEEVNGKKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDGGAS
VDEETYETKSLHCSNMESLATNAERDSIKYMQVKYMQDHQDEEFLGVISGVTEWGIYVEI
VSNKCEGMVRIREIKDDYYTFDEKQYALVGATSNSILQLGDEIYVKVKNADLVKKQLDFH
FLRRAE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaattagaaagccgataaaaaaagagaaagatttctctgggaagatcctt
aagattttatcgcaaaatgccaataagccatttaattataaacagataggagcgaagtta
gaacttgacgatacaaatagcagaaaccagattataaaagatttaaaaattctggctgct
caaaagaaaattgtagaaacagaacctggaaaatatttagttaaagcaattagtcaggat
tattacgaaggaacgatagatatgacgagcagaaaaacggcatattttatttgtgacgaa
tttgaagaagatgtttttattccgactaataatttgaatcgtgctttagataaagacaaa
gtaaaagtttacgtttataaccgtagaaaaggtaaaagaccagaaggtgaagtaattgaa
gttatagaaagagataaaactgaatttgttggagtaattgatattcaggcaaattttgct
tttgtttcaactgcaaatcctaaaatgtataccgatatttttattccaaaggataaaatc
ggtgaagcagaaaatggagatgttgttcttgtaaaaattgatgactggccaaaaagagcc
gatagtccgtttggatctgtaattagagttttaggaaaacccggagaacacaatactgag
attcatgctattttagctgaatacggattgccatctgatttcccggtagaagtagaagtt
tttgcacaaaaattagatacttcgattcaggaatctgaaattgcaaaacgtcgtgatatg
cgtgatacgcttacgtttacgatagatccaaaagatgcaaaagattttgatgatgcatta
tctttcaaaaagttagagaacggaaatttcgaaatcggaatccatattgccgatgtttct
tattatttagaagaaggaacaattctggatgatgaagcttatcaaagagcaacttcggtt
tatttagtggatagagtagtgccaatgcttcctgaagtattgtctaattttgcctgttca
cttcgtccgaatgaagagaaatatacattctctgcagtatttgaagtttctccagcttca
caagttatcaaccaatggtttggaagaacagtaatttattcagatcagcgttttgcttat
gaagaagcacaatatatcattgaaacaaaagacaatacgattccggttgatatttctatt
actggagaatcttatgtggtttcagatgaaattgtagaagcaactttaaaactagatgaa
ttagctaagattttaagaaagaaaagaatgcagaatggtgctatttcttttgataaagtt
gaagtaaaatttaatttgaatgaagaaggagaaccagaaggggtttactttaaaatctca
aaagatgccaatcatctaattgaagaattcatgcttttggcaaacagaaaagtggcggaa
tacattggtaaacaaaagaaaacctttgtttacaggattcacgacgaaccaaacgaagat
aaattgattgcgatgcaaactgtaattgctaaatttggttataaaattgattttagaaat
aaaggcgatattgcaaaatcattgaactctttgatggaagaagtaaatggtaaaaaagag
caaaacttaattgatactcttgcaattagaagtatgagtaaagccaaatattcaacagat
aatattggacattatggtttagcttttgattattacagccattttacatcgccaattcgt
cgttatccagatgttatggtacatcgtttgttacagtattatctggatggaggagcttct
gtagatgaagaaacatatgaaacaaaaagtttacattgttctaatatggaaagtttagcg
actaatgctgaacgagatagtattaaatacatgcaggttaaatacatgcaggatcatcag
gatgaagaatttcttggtgttatttctggtgttacagaatggggaatttatgttgaaatc
gtttctaataaatgcgaaggaatggtaagaatcagagaaataaaagatgattattatact
ttcgatgaaaaacaatatgcattggttggagctacttcaaacagcattttgcaattagga
gacgaaatttatgtgaaagtaaaaaatgccgatttagtgaagaaacaactggattttcat
tttttacgaagagcagaataa
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