Flavobacterium panici: NLJ00_06905
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Entry
NLJ00_06905 CDS
T08520
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fpb
Flavobacterium panici
Pathway
fpb03030
DNA replication
fpb03430
Mismatch repair
fpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLJ00_06905 (dnaE)
03430 Mismatch repair
NLJ00_06905 (dnaE)
03440 Homologous recombination
NLJ00_06905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpb03032
]
NLJ00_06905 (dnaE)
03400 DNA repair and recombination proteins [BR:
fpb03400
]
NLJ00_06905 (dnaE)
Enzymes [BR:
fpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NLJ00_06905 (dnaE)
DNA replication proteins [BR:
fpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NLJ00_06905 (dnaE)
DNA repair and recombination proteins [BR:
fpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NLJ00_06905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
UUF15842
LinkDB
All DBs
Position
1547399..1551937
Genome browser
AA seq
1512 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPY
DAERIHGISTELAEADGISLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVES
QMSSMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEATT
RCFLELVRREVFTKEELDVPQGYFKDFQERNSEPFKLIGLKHINLKAASDKIREQLKALQ
VDDSQTTVSESDKADFKAAKFAHLHNHTQFSVLQSTIGIGNIVAAAAKNGMPAVAMTDTG
NMMGAFHFVSAVMNHNKAASGKNKALVEAGEEPTETEVKPIVGCEFNICENHLDKSKKDN
GYQVVLLAKNKAGYHNLAKMASIAYTEGFYYVPRIDKNIVEKYKEDIMVLSGNLYGEIPS
KILNIGENQAEDALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEEEMKKLFSDLPE
AIINIQEVIDKVEGYSLYRDVLLPKFDIPEEFIVPEDEADGGVRGENKYLRHLTMVGAAK
RYGEITESIQERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDE
FDNVKELIAIANEGDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDTFPIDDEETYA
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEE
IKYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDNYAVRFGMGAIKGVGSGA
VETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAMRYGSKFQENENSSQVSLFGETSEVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAVFN
LEGYDESFEFKIFGEEYLKFRHFLIQNNFAYLKILIKDGWVNHDTGKKSEPRMQFVEVRQ
LQDILEAFAKKLILLLNIKDLQPEFIHKLSNLFNENKGDNTVSFDIMEIENVKRLVEVET
TSEFEDSEDAVFEDENDDNEAVAGEAKMQEVKEVEEVKVVTKLTMPSRRLKIRISAELLQ
ELEKMQINFKLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatattcgataccgaaacaaccggattaccaaaacgctgggatgccccaata
accgattctgataactggcctcgctgtatacagattgcgtggcagcttcatgacgaaatg
ggacagcttattgagcatcaggattacttggtaaaaccagaaggatttaatattccgtat
gatgccgagcgtattcacggaatctcaactgaattggctgaagccgatggaatctcgctg
gccgaagttttagagaaattcaatatcgctttaagcaaaaccaaatttattgttggacag
aatttaggtttcgacgttaatattatgggagccgaattccatagaatgggagtggagtct
caaatgagttcaatgcctgttttggatacttgtaccgaagttacggcttcgttattgcag
cttcccggaggtcgtggaggaaaattcaaacttccaactttgaccgaattacacagctat
cttttcgaccagccttttgcggaagcgcacaacgcaactgccgacgttgaggcaactacg
cgttgtttcctggaattggttagaagagaagtttttacaaaagaagaattagacgttccg
cagggttatttcaaagactttcaggaaagaaattcggagccgtttaagcttattggttta
aaacacatcaacttaaaagcagcttctgataaaatcagagaacagcttaaagcattacaa
gttgacgatagccaaactaccgtttcagaatctgataaagcagattttaaagcggcaaaa
tttgcacatttacacaatcatacgcagttttcggttttacaatctactattggaattgga
aatattgtggcggctgcagccaaaaacggaatgccggccgttgccatgactgataccgga
aacatgatgggagcttttcactttgtgagcgccgttatgaaccacaacaaagcagcatca
ggaaaaaacaaagctttggttgaagccggagaagaaccgacagaaacagaagtaaaacca
attgtaggctgtgaatttaatatttgtgaaaaccatttagacaaaagcaaaaaagacaac
ggttatcaggttgttttattggctaagaacaaagccggttatcacaatttggctaaaatg
gcttcgattgcttataccgaaggattttattatgttccgagaattgacaaaaatatagtc
gaaaaatacaaagaagatattatggttttgtctgggaatttatacggagaaattccgagt
aaaatcctgaacattggtgaaaaccaagccgaagatgctttaatttggtggaaagaacaa
tttggcgaagatttctatttagaagtaatgcgccacaatcaggaagatgaaaatcgtgtc
aataaaaccctgattgaattttcgcaaaaacacaacgtcaaattaattgcgactaacaat
acctattatttaaataaagaagatgccaatgcgcacgatattttactttgtgtaaaagat
ggcgaaaagcaggcaacacctattggacgtgggcgtggttaccgttacggacttccaaat
caggaatattattttaagtcagaagaggagatgaaaaaactcttttctgatctgccagaa
gcgattataaacattcaggaagttattgataaagttgaaggatattcgctttaccgagat
gtattgcttccgaagtttgatattccggaagaatttatagttcctgaagatgaagcagac
ggaggtgttcgaggtgaaaataaatacctgcgacaccttaccatggttggtgccgcaaaa
cgatatggagaaattacagaatcgattcaggaacgtttggattttgaattattgacgatt
tcaaattcaggatatccgggttactttttgattgtacaggatttcattgccgaggctaga
aaaatggacgtatcggttggtcccggacgtggatctgcagcgggttctgccgttgcatat
tgtctcggaattaccaatattgaccccattaaatacgatttactttttgagcgtttccta
aatcctgaccgtgtatcgatgcccgatattgatatcgactttgatgacgagggtcgtgga
cgtgtaatggattatgtaatcaataaatacggtcaaaaacaggtggcgcagattatcact
tatggtaaaatggcgacgaaatcagctattcgtgatacggctcgtgtattggatttacca
ttatttgaagccgatagaattgcgaaactgattccgggaatgatgccgtcaaaatggaat
ttggcgcgttttatttcagagagtgaagaggaagttaaaaaagcacttcgttcggacgaa
tttgataatgtaaaagaattaatcgccattgcaaatgaaggtgatttggcaggagaaacc
attcagcaggcaaaaatccttgaaggatcgatgcgtaacacgggaattcacgcctgcggg
gtaatcattacaccatcggatattacgaattacgttcccgtaacgacagcaaaagattct
gatttatatgtaacgcagtttgataactcggttgcagaaagtgccggattgctgaaaatg
gacttcttgggtctgaaaacccttacgctgataaaagatactgttaaactggtaaaatac
agaacaggaattgatctggatcccgatacatttcctatcgatgatgaagaaacgtatgcg
cttttccaaagaggtgaaactgttggaatcttccaatacgagtcgcccggaatgcagaaa
tacatgaaagatcttaaaccaacggtttttggagatttaattgccatgaatgcactttat
cgtccgggacctttggaatatattccttctttcgttcgaagaaaaaacggtgacgaagaa
atcaaatacgatttagatgcctgtgccgaatatctatcagaaacctacggaattacggtt
taccaagagcaggtaatgcttttgtctcagtctttggcaggatttacaaagggtgaggcc
gacgttttgcgtaaagcgatgggtaaaaaacaaaaagacgtactggataaaatgaagccg
aagttcgttgaacaagcagcacaaaaaggtcacgatgccaaaattctggagaaaatctgg
aaagactgggaagcctttgcgagttacgccttcaacaaatcgcactcgacttgctatgcg
tggattgcctatcaaacggcttatttgaaagcacattatccggccgaatatatggcagcg
gtactttcgaataatatgaacgatatcaaacaggtttcgttttttatggaagaatgtaaa
cgtatgggattacaggttttaggtccagatgtaaacgaatcttactataaatttacggta
aacgataattatgccgttcgttttggaatgggcgctattaaaggtgttggttccggagct
gttgaaactattgttgaaaacagaaaagatggaaggtataagtcaatttttgatttggcg
aaacgaatcgatttgcgtgcagccaataaaaaagcaattgaaaacttagcacttgccgga
ggttttgattcatttgaaggaacaacaagagcacaatatttccatgatgatggcgatgga
attacgttctacgaaaaagcgatgcgttacggatcgaaatttcaggaaaatgaaaactca
tcgcaggtaagtttatttggagaaaccagcgaagtacaaattgcagaacctgttgtaccg
ccatgtgaagactggagtacaatggaaaaactggcaaaagaaaaagaggttgtagggatt
tatatttccggacatccgcttgatgatttcaggtttgagatgaaatacttctgcaacgcc
cgattagaagcgttgaaaagtatgaatgaatatgtaggtaaaaatttaaactttgccgga
atcattaataacgtacagcatcgtgtagccaaaaacggaaaaggctgggccgtatttaac
ttggaaggatatgacgaaagttttgagtttaagatttttggtgaagaatacttaaaattc
cgccatttcctgattcagaataattttgcttatttaaaaatattgatcaaagatggctgg
gtaaaccatgatacaggtaaaaaatcagaacccagaatgcagtttgttgaggtacgacag
cttcaggatattttagaagcatttgccaaaaagctgattctattattaaatatcaaagat
cttcagcctgagtttattcataaattaagtaatttatttaatgaaaataaaggcgataat
accgtgagttttgatatcatggaaatcgaaaatgttaagcgtttagttgaggtcgaaact
acaagtgagtttgaagacagtgaagatgctgtttttgaagatgaaaatgatgacaatgaa
gcggttgccggagaagctaaaatgcaggaagtaaaagaagtcgaagaagtgaaagttgta
accaaattaacgatgccaagcagaaggttaaaaattaggatttcagccgaacttcttcag
gaattagagaaaatgcagataaattttaagctgaactaa
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integrated database retrieval system
