Flavobacterium panici: NLJ00_10590
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Entry
NLJ00_10590 CDS
T08520
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpb
Flavobacterium panici
Pathway
fpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NLJ00_10590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpb03021
]
NLJ00_10590 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpb03400
]
NLJ00_10590 (rpoC)
Enzymes [BR:
fpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NLJ00_10590 (rpoC)
Transcription machinery [BR:
fpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NLJ00_10590 (rpoC)
DNA repair and recombination proteins [BR:
fpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NLJ00_10590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UUF16546
LinkDB
All DBs
Position
2402951..2407258
Genome browser
AA seq
1435 aa
AA seq
DB search
MMNNRNNKDKNPIKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERI
FGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLP
NKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQE
NQYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQVV
ESFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLK
RLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQ
NLLGKRVDYSARSVIVVGPELKLFECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKKI
IDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNAD
FDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIST
EDHIILGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNDAGELVYKIIQTTAGRVLF
NEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSL
GDIRIPEQKTKLIADAREQVEGISVNYNMGLITNNERYNQVIDVWTSANAQLTELAMKNI
REDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEG
LSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVSALK
KNEEIVESLGERILGRVALQDVINPLTNEVMVQSGQQITEAIMRTIEASPIEKVEVRSPL
TCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISE
ESSIITRFNGRLEIEDLKTVKGEDSEGNAVDIVVSRSTELKLVDEKTGIVLNTHNIPYGS
SIFVKDGETVAKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKVI
SEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGDI
TGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSSQ
ILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEV
VIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDAGDSAVLKPGQIISP
RELRDENSLLKRNDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNE
AAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataataaagataagaatccaattaaaagatttaacaaaatctct
attggattggcttcaccagaatctatcttgaaagaatcaagaggagaggttttaaagcca
gaaacaatcaactacagaactcacaaaccagagcgtgacggacttttctgcgaaagaatc
ttcggacctgttaaggattttgaatgtgcttgtggtaaatataaaagaattcgttacaaa
ggtatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgataga
gtaggacatatcaaccttgttgtgccaatcgctcatatctggtacttccgttctcttcca
aacaaaattggttatatccttggtcttccatctaagaaattagatatgatcatttactac
gaaagatatgtagtaattcaagctggtattgctaaaaatgcagatggagaatctttacaa
agactagatttcttaactgaagaagaatatttgaatattttagatactcttccacaggaa
aaccaatatttagatgatttagatccaaataaatttgttgccaaaatgggagcagagtgt
attatggatttattggctcgtattgacctagatgctttatcttatgaattaagacacagc
gctaacaacgaaacatctaaacaacgtaaaactgaagcattaaaaagattacaagttgtt
gagtctttccgtgagtctaacgaaaaccgcgaaaaccgtccagaatggatgattatgaaa
gtggttccagttatcccaccagaattacgtccgcttgtgccgcttgatggaggtcgtttt
gcaacttcagatttgaatgacttatatcgtcgtgtaatcatccgtaacaaccgtttgaaa
agattaatggaaattaaagctccagaagttatcttaagaaacgagaaacgtatgttacaa
gaatctgtagattcattatttgataacactcgtaaagcttctgctgttaaaacagaatct
aacagaccattaaaatcattatctgattcgttaaaaggtaagcaaggacgtttccgtcaa
aacttacttggaaaacgtgtggattattctgctcgttcggtaattgttgttggccctgag
ttaaaattattcgaatgcggattgccaaaagatatggcatctgaattatacaaacctttc
gttatccgtaaattgattgaaagaggtattgtaaaaacagtaaaatctgctaagaaaatc
atagacaaaaaagagccggtagtttgggatattttagaaaatgtaattaaaggacaccca
gtattactgaaccgtgctcctactttgcacagacttggtattcaggctttccagccaaaa
ttaattgaaggaaaagcgatccagttacacccattagtttgtacggcttttaacgccgat
ttcgacggggatcagatggcggttcacttacctttaggaccagaagctattttagaggct
caattattaatgttggcttctcacaatatcttgaaccctgcaaatggagctcctattacg
gtaccatctcaggacatggttttgggtctatattatatgaccaaagaacgtatttctaca
gaagatcacattattttaggtcaggatttgactttctattctgctgaagaagtaaacatt
gcattaaacgaaggaagattagaattgaatgctcgtgtgaaaattagagcaaaagatttt
aatgacgctggagaattagtgtacaaaattattcaaacaactgcaggacgtgtattattt
aacgaagtagtacctgaagcagctggatatatcaatgacgtattgactaagaaaaacctt
agagatattatcggacacattttaagtgtgactgatgtacctacaacggcagctttcttg
gataatatgaaagatatgggttataaattcgcatttagaggaggtttatcattctcttta
ggtgatattagaattccagaacaaaaaacaaaattaattgcagatgccagagagcaagtt
gaaggtatttctgtgaattataacatgggtcttattaccaataacgaacgttacaaccaa
gttattgacgtatggacttcagcaaatgctcagttaacagaattagcaatgaaaaatatt
agagaagaccaacaaggtttcaactctgtatatatgatgcttgactctggggcgaggggt
tctaaggaacagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaa
tctactgctggtggtggtgagattattgaaaacccgattctttctaactttaaggaaggt
ctttcgattcttgagtactttatttctactcacggtgctcgtaaaggacttgcggatacg
gctcttaaaacggccgatgccggatacttaacaagaaggcttcatgacgtttctcaagat
gttattgttaacatcgaagattgtggaactttaagaggtgttgaagtttctgcattgaag
aaaaatgaggaaatcgttgaatcattaggagaaagaattttaggacgtgttgcattgcaa
gatgttataaacccacttactaatgaagtaatggttcaatctggacagcaaattactgaa
gcaattatgagaactatcgaagcttctccaattgaaaaagtagaggttagatctccatta
acttgtgaggctttaaaaggtatttgtgctaaatgttacggtagaaacttagctactggt
aagatgacacaaagaggtgaagctgtcggagttattgcagctcagtctattggagagcca
ggtacacagttaacacttcgtacgttccacgttggaggggttgctggaggtatttctgaa
gaatctagtattattacaagattcaacggtagacttgagattgaagatttaaaaactgtt
aaaggtgaagacagcgaaggtaatgcggtagatatcgtagtatcacgttcaactgaatta
aaattagttgatgagaaaactggaatcgtcttaaatacacataacattccttacggttct
agtatctttgttaaagatggagaaactgttgctaaaggaactgtaatctgtaagtgggac
ccttataatggtgtaattgtttctgagtttactggtaagattgcttacgaggatttagag
caaggacaatcattcatggtagagatcgatgagcagactggtttccaggaaaaagtaatt
tctgaggctagaaataaaaaattaatcccaacgttattagtttatggtaaagaaggtgaa
ttaattcgttcttacaacttaccagtaggtgcacacttaatggttgaaaacggtgagaaa
attaaagcaggtaaagtattagtaaaaatcccacgtcgttcttctaaagcaggcgatatc
acgggaggtttaccaagaattaccgagttgcttgaggctcgtaacccttcaaacccagcg
gttgtatctgaaattgatggtgttgtttcttttggaaaaatcaaaagaggtaaccgtgag
atcgttatcgaatctaaatttggtgaaattaaaaagtatttagttaaactttctagccag
atcttagtacaagaaaatgacttcgtaagagcgggagttccattgtctgatggtgcaatt
acaccagatgatatcttgagaattcaaggacctgctgctgttcaacagtacttggtaaat
gaaattcaagaggtttaccgtttacaaggggtaaaaattaatgacaagcactttgaggta
gttattcgtcaaatgatgcgtaaagtaagagttcaggatccaggagatacattattccta
gaagatcaattaattcacactaaagatttcatcgttcaaaacgataaattatacggtatg
aaagtagttgaagacgctggagattctgctgtattgaaaccaggtcagattatttcacct
cgtgagttacgtgatgagaattcattattgaaacgaaatgataaaaatcttgttgtagca
agagacgtaattactgcaactgcaacgccagttcttcaaggtattacaagagcttcgtta
caaactaaatcattcatttctgcggcttcattccaggagacaacgaaagtacttaacgaa
gctgcagtagctggtaaagtagatgatctagaaggattaaaagaaaatgtaattgttgga
cacagaattcctgcgggaactggtatgagagaatacgataacactattgtaggatctaaa
gacgattacaatgaaatgatggctaataaagaagaatacatttattaa
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