Flavobacterium panici: NLJ00_15645
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Entry
NLJ00_15645 CDS
T08520
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fpb
Flavobacterium panici
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fpb03016
]
NLJ00_15645
Enzymes [BR:
fpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NLJ00_15645
Transfer RNA biogenesis [BR:
fpb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NLJ00_15645
Prokaryotic type
tRNA splicing ligases
NLJ00_15645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UUF12690
LinkDB
All DBs
Position
3735722..3737113
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AA seq
463 aa
AA seq
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MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKFEGHGTW
GKVAEGLIKPVQVRMHQLKATRAPFTIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
MNETHASRVDHEVFHKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLEKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAGE
GQLGIIPGSMTAPGYIVKGKGNAESLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMANQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattaactggaaaagacctgattaaattgggttttccaaagaacaattca
ataaacatcgccttagggcagataaacagatatagaaaaagagaaaaaaaggaatctatt
ctaacagaggcaaaagacgttctgctgaatcctgaaaaatttgaaggccacggaacctgg
ggaaaagttgccgaaggtttgattaaaccggttcaggtaagaatgcatcagcttaaagca
acaagagctccttttactatttttggtgaaaatgaaattgaccagcaggcaaaatttcaa
ttgtatgattcgttgaaactgccaatttcagtagccggagctttaatgccggatgcacat
tcaggatatggattgccaattggcggagttttagcaacagataatgctgtgattccatac
ggagttggagttgatattggatgtcgaatgagcctttcaatttttgatttgccagcgtcg
catttcaaaggaaaagaacatcagttagaagcaattttaaaagacaatacaaaattcgga
atgaatgaaacacacgcttcaagagtagatcatgaagtttttcataaaagtgaatttcag
gatattccgctgttaaagaatcttttaccaaaagcctataaacaattaggaagttcaggc
ggaggaaaccattttgtagaattcggaattgctaaaattgataatccggagaatgaatgg
aagcttgaaaaaggcgaatatttcgcagtcctttcacatagtggttctcgtggtttgggt
gcaaatattgcaaaacattatacctatttggcaacaaaacaatgtccgttaccaaaaaat
gtacagcatttagcctggctggatttgaatacacatgatggtcaggaatattggctggca
atgaatttagccggagaatatgcaaaagcctgtcacgatgatattcacagacgaattgcc
aaagcgattggaaaaagagtagtggttacaattgaaaaccatcacaattttgcatggaaa
gaaatggtaaacggtcaggaatgtattgtgcaccgaaaaggagcaactccggcaggagaa
ggtcaattgggaattattcccggttcaatgactgctccgggttacattgtaaaagggaaa
ggaaacgcagagagtttaaattctgcttcgcatggtgccggacgtttgttttcgagagca
aaatgcaaaagtacttttacgcaaagcgaaatcaaaaaggttttgaaagccaatgatgta
accttgattggtggaaatattgatgaagcgccaatggcatacaaagacattacaaaagta
atggcaaaccaaaccgatttggtcgaagtcttaggaacttttacgccgaagattgttaga
atggatcgttaa
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