Flavobacterium panici: NLJ00_16410
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Entry
NLJ00_16410 CDS
T08520
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fpb
Flavobacterium panici
Pathway
fpb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NLJ00_16410 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpb03400
]
NLJ00_16410 (ligD)
Enzymes [BR:
fpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NLJ00_16410 (ligD)
DNA repair and recombination proteins [BR:
fpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NLJ00_16410 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UUF12841
LinkDB
All DBs
Position
complement(3904338..3906887)
Genome browser
AA seq
849 aa
AA seq
DB search
MSLSKYNEKRDFKQTREPKGKIGKSASELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSLDPEIKRLAMMVEDHPYSYKDFEGTIPEGNYGAGNVIVWDNGTYTSDEKTASDEKQL
LADLKKGRLSFILKGKKLKGEFSLVKLHGKQENAWLLIKKQDKYATDTDILEKNKSVISK
RSLEQLEKKSEKVKAKPEEKEEKQTIKKKFKAKPAEVSFVKPMLATTVEKPFDDEEWVFE
NKYDGYRTVAVINPDEVNLFSRNQISFNVSFKPIADELKKIDHTVILDGEIVVENESGKA
DFQLLQNYLKTGIGNLKYYVFDLLNLDGNSVTDLSLLDRKELLKILFNKYDFTNVFYSEH
TIGDGIKQFEKARKNNSEGIIAKKADSSYNIATRSNNWLKIKISNEEEAIIIGITEPKNS
RKYFGAILLGQYNDGELKYIGKCGTGFSEEVLKELYTKLKPLFLDKSPLSEKVPIRDKIQ
WVKPKVVCQVKYSEWTQDNNLRHPVYLGLRIDKKANEVVFSGKSKTNLKQNKMEDLKEHK
TENDYDLKVGKATLHLTNQNKIYFPADGITKGEIIQYYNEVSSLILPYLKDRPESMNRFP
NGIDAPSFYQKDIDLEKTPKWLKTKKIFSESNEENIDYLICNDKETLLYMANLGCIEINP
WNSTIKNIHNPDWLVMDLDPAKEDDFHIVVETAQVVKQVMDELETECLCKTSGATGLHIY
IPLGAQYDYDSIKILGELIAKEVQTRLPDITTIERSIKKRDNKLYIDYLQNRRGQTLAAP
YSVRPKPGATVSTPLEWSEVTTKLHPSQFTIKNVLQRFEKKGDLWEPVLSKGANIKKIIK
KLEEKQERV
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgtctaaatacaacgaaaaaagagattttaaacaaacccgcgaaccaaagggt
aaaatcggaaaatcagcaagtgaattgatttttgtcgttcaaaaacatgctgcatcacat
ttgcattatgattttagattagaaatggacggagttcttaaaagctgggctgttccaaaa
ggtccatcacttgatccggaaataaaacgcctcgccatgatggtcgaagatcatccttac
agttataaagattttgaaggtactattcccgaaggaaattatggtgccggaaatgttatt
gtctgggataacggaacgtatacttctgacgaaaaaaccgcctcagacgaaaaacaatta
ttagccgatttgaaaaaaggacgtttaagttttatcttaaaaggaaaaaaacttaaaggg
gaattttcattggtaaaacttcacggaaaacaggaaaacgcctggctgttgatcaagaaa
caagataaatatgctacagatactgatattttagaaaaaaataaatcggttatttctaaa
agaagtttagaacaactggagaaaaaatctgaaaaagtaaaggcaaaaccagaagaaaaa
gaagaaaagcaaacgataaaaaaaaagtttaaagcaaaacctgccgaagtttcttttgta
aaaccaatgcttgccactacagtcgaaaaaccttttgatgatgaagaatgggtttttgaa
aataaatatgacggctatcgtactgttgccgttattaatccggatgaagtaaatttattc
agcagaaatcaaatttcgttcaatgtcagttttaaacccattgcagatgaattgaaaaaa
atagatcacaccgtaattctggatggcgaaatcgtggttgaaaatgaatccggaaaagct
gattttcaacttcttcaaaattatcttaaaactggaatcggaaacctaaaatattatgtt
tttgatctgcttaatttagatggaaattcggtaacagacctttctctgcttgacagaaaa
gagcttttgaaaattttatttaataaatatgattttacaaatgttttttattcggaacat
actattggggatggaattaaacaatttgaaaaagcccgaaaaaataacagcgaaggtatt
attgccaaaaaagctgacagtagctataatatagccaccagaagtaataactggcttaaa
attaaaatttctaatgaagaagaagccatcatcattggaataacagaacctaaaaattcc
cgaaaatattttggtgccattttactgggccaatataatgacggagaattaaaatatatt
ggaaaatgcggaacgggtttttcagaagaagttctaaaggagctttatacgaagcttaaa
ccgttatttctggataaatccccgctaagtgaaaaagttccaataagagataaaattcaa
tgggttaaacccaaagttgtctgtcaggttaaatattcagaatggacacaggataataac
ctgagacatcctgtttatctgggattaagaattgataaaaaagccaatgaagttgttttc
agtggcaaaagcaaaactaacctcaagcaaaataaaatggaagatttaaaagaacacaaa
accgaaaatgattacgatttaaaagttggaaaagccactttacatttaacaaatcaaaac
aaaatatattttcctgctgacggtattacaaaaggcgaaattattcaatattataatgaa
gtttcatcgcttattctgccttatttaaaagatcgtccggaatctatgaaccgctttcct
aacggaattgatgcgccaagtttttatcaaaaagatattgatttggagaaaactccaaaa
tggctgaaaaccaaaaaaatattctcagaatctaacgaagaaaacatagattatcttatt
tgtaatgataaagaaacattgctttatatggcaaatttgggctgtatagaaataaatccg
tggaattcgaccataaaaaacattcacaatcccgactggcttgtaatggatcttgatccg
gcaaaagaagacgattttcatattgttgttgaaactgcacaagttgtaaaacaagttatg
gatgaattagaaacggaatgtttgtgcaaaacttcgggagcgacaggacttcatatttac
attccgcttggtgcgcagtatgattatgattcgataaaaattttaggagaattaatcgcc
aaggaagttcagacaaggcttccggatattacaacaattgagcgaagcatcaaaaaacga
gataataaactttatatagattatctgcaaaaccgccgcggacaaactttggccgcgcct
tattctgttcgtcctaaacctggtgcaacagtttcaacacctttagaatggagtgaagtt
actacaaaattacatccgtcgcagtttacgattaaaaatgtattacagcgatttgagaaa
aaaggggatttatgggaacctgttttatcaaaaggtgccaatatcaaaaagataatcaag
aaattagaagagaaacaagaaagagtctaa
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