Flavobacterium panici: NLJ00_19410
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Entry
NLJ00_19410 CDS
T08520
Name
(GenBank) collagen-like protein
Organism
fpb
Flavobacterium panici
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
UUF13425
LinkDB
All DBs
Position
complement(4593135..4599023)
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AA seq
1962 aa
AA seq
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MKNRLLPLFVVLATFSARSQVGIGTKSPNASAQLEVTTNEKDPYGNSTKGILIPRVTLEK
TTQFGPIEGDPTKSNSLLVFNIKEQNDVTPGYYYWYVDRWMRFAVSGEAGSGTGKNGMDG
IPGTEIWKEIPGNEGKTITEFLAGLKGADGKSAFEIWKELPGNDGKTITEFLAGLKGATG
TDGVDGKSAFEIWKELPGNDGKTITEFLAGLKGATGTDGIDGKSAFEIWKELPGNDGKTI
TEFLAGLKGATGTDGVDGKSAYEIWKELPGNDGKTITEFLAGLKGATGTDGIDGKSAFEI
WKELPGNDGKTITEFLAGLKGATGTDGVDGKSAYEIWKELPGNDGKTITEFLAGLKGATG
TDGVDGKSAFEIWKELPGNDGKTITEFLAGLKGATGTDGVDGKSAFEIWKELPGNDGKTI
TEFLAGLKGATGTDGVDGKSAFEIWKELPGNDGKTITEFLAGLKGATGTDGVDGKSAYEI
WKELPGNDGKTIEEFLAGIKGATGADGKSALEIWKELPGNDGKDGKDFLDGLKGATGADG
LAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGASAFDIWKE
LPGNDGKTIEEFLAGIKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKG
ATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGASA
FEIWKELPGNDGKTIEEFLAGIKGATGADGKSALEIWKELPGNDGKDGKDFLDGLKGATG
ADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGADGLAG
AQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGKSALEIWKELPGNDGKTIEEF
LAGIKGATGADGLAGAQGATGADGKSALEIWKELPGNDGKDGKDFLDGLKGATGADGLAG
AQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGADGKSALEIWKE
LPGNDGKDGKDFLDGLKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKG
ATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGKSALEIWKELPG
NDGKDGKDFLDGLKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATG
ADGLAGAQGATGADGKSALEIWKELPGNDGKDGKDFLDGLKGATGADGLAGAQGATGASA
FEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEF
LAGIKGATGADGKSALEIWKELPGNDGKDGKDFLDGLKGATGADGLAGAQGATGASAFEI
WKELPGNDGKTIEEFLAGIKGATGANGLAGAQGATGADGKSALEIWKELPGNDGKDGKDF
LDGLKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQG
ATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADGLAGAQGATGASAFEIWKELPGNDG
KTIEEFLAGIKGATGADGLAGAQGATGASAFEIWKELPGNDGKTIEEFLAGIKGATGADG
LAGAQGATGAKGDQGIQGLRGATGADGLAGAKGATGATGKSAYEIWESVTANNGKTQAEF
LIAIKGAKGDPGIQGVAGPTGGQGTQGFPGEQGEQGPQGIPGLPGAKGATGAKGDQGIQG
LKGATGADGLAGAKGATGADGRGITSTTIDSTTGEMTIRYTDGTSANAGNVKAVIDPKDL
TSAQPEILEVTNGTGAVLLDSSVKILPSDKEGQVLTTVTDGTTKTVKWADPKSNNVMNIR
TTAVSTEVADDDYTIIAAGMTGDITITLPAAGSNKGRILVINQNDVSNAGTELTVKFDVD
VIYSSKIKAKELLAPFYSATTGGTLKISLQSDGTNWYVVSSL
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatagattactccctttatttgttgttttggctaccttctcggcccgttctcag
gttggtattggaactaaatcaccaaatgcatcggcccaattagaggtcacgactaatgaa
aaagacccatatggtaatagtaccaaaggtattttgattcctagggttactttagagaaa
acaactcaatttggtccaatagaaggtgatccaactaaaagtaatagtttactggttttt
aatattaaggaacagaatgatgttacaccaggttattactactggtatgttgacagatgg
atgagatttgcagtttcaggtgaagctggttcgggtacaggaaaaaatggtatggatggt
attcctggaacagaaatttggaaagaaattcctgggaatgaaggtaaaacaataacagaa
ttcttagctggtcttaaaggagcagatggaaaatcggcatttgaaatctggaaagaactt
cctggaaatgacggaaaaacaatcacagaattcttagctggattaaaaggtgcaaccgga
acagatggtgttgatggaaaatcagcatttgaaatctggaaagagcttcctggaaatgac
ggaaaaacaataacggaattcttagctggattaaaaggggcaaccggaacagatggtatt
gatggaaaatcggcatttgaaatctggaaagaacttcctggaaatgacggaaaaacaata
acggaattcttagctggattaaaaggggcaaccggaacagatggtgttgatggaaaatcg
gcatatgaaatctggaaagagcttcctggaaatgacggaaaaacaatcacagaattctta
gctggattaaaaggagcaaccggaacagatggtattgatggaaaatcggcatttgaaatc
tggaaagaacttcctggaaatgacggaaaaacaataacggaattcttagctggattaaaa
ggggcaaccggaacagatggtgttgatggaaaatcggcatatgaaatctggaaagagctt
cctggaaatgacggaaaaacaatcacagaattcttagctggattaaaaggagcaactgga
acagatggtgttgatggaaaatcggcatttgaaatctggaaagagcttcctggaaatgac
ggaaaaacaataacggaattcttagctggattaaaaggagcaaccggaacagatggtgtt
gatggaaaatcggcatttgaaatctggaaagaacttcctggaaatgacggaaaaacaatc
acagaattcttagctggattaaaaggagcaactggaacagatggtgttgatggaaaatcg
gcatttgaaatctggaaagagcttcctggaaatgacggaaaaacaatcacagaattctta
gctggattaaaaggagcaactggaacagatggtgttgatggaaaatcggcatatgaaatc
tggaaagaacttcctggaaacgatggtaaaacaatcgaagaattcttagcaggcataaaa
ggagcaactggagcagatggtaaatcagctttagagatctggaaagaacttcctggtaat
gatggaaaagacgggaaagactttttagacggattaaaaggagcaaccggagcagacgga
ttagccggagcgcaaggggcgactggagcatcagcatttgaaatctggaaagaacttcct
ggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaaggagcaaccggagca
gacggattagccggagcacaaggggcgactggagcatcagcatttgatatctggaaagaa
cttcctggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaaggagcaact
ggagcagacggattagccggagcacaaggggcaacaggagcatcagcatttgaaatctgg
aaagaacttcctggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaagga
gcaaccggagcagacggattagccggagcacaaggggcaactggagcatcagcatttgaa
atctggaaagaacttcctggaaatgatggtaaaacaatcgaagaattcttagcaggtata
aaaggagcaaccggagcagacggattagccggagcgcaaggggcaactggagcatcagca
tttgaaatctggaaagaacttcctggaaatgatggtaaaacaatcgaagaattcttagca
ggtataaaaggagcaactggagcagatggtaaatcagctttagagatctggaaagaactt
cctggtaatgatggaaaagacgggaaagactttttagacggattaaaaggagcaaccgga
gcagacggattagccggagcgcaaggagcaacaggagcatcagcatttgaaatctggaaa
gaacttcctggaaacgatggtaaaacaatcgaagaattcttagcaggtataaaaggagca
accggggcagacggattagccggagcacaaggggcaactggagcagacggattagccgga
gcacaaggggcaactggagcatcagcatttgaaatctggaaagaacttcctggaaacgat
ggtaaaacaatcgaagaattcttagcaggcataaaaggagcaactggagcagatggtaaa
tcagctttagagatctggaaagaacttcctggaaatgatggtaaaacaatcgaagaattc
ttagcaggtataaaaggagcaactggagcagacggattagccggagcacaaggagcaact
ggagcagatggtaaatcagctttagagatctggaaagaacttcctggtaatgatggaaaa
gacgggaaagactttttagacggattaaaaggagcaaccggagcagacggattagccgga
gcacaaggggcaacaggagcatcagcatttgaaatctggaaagaacttcctggaaatgat
ggtaaaacaatcgaagaattcttagcaggtataaaaggagcaactggagcagacggatta
gccggagcacaaggagcaactggagcagatggtaaatcagctttagagatctggaaagaa
cttcctggtaatgatggaaaagatgggaaagactttttagacggattaaaaggagcaacc
ggagcagacggattagccggagcacaaggggcaactggagcatcagcatttgaaatctgg
aaagaacttcctggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaagga
gcaaccggagcagacggattagccggagcacaaggggcaactggagcatcagcatttgaa
atctggaaagaacttcctggaaacgatggtaaaacaatcgaagaattcttagcaggcata
aaaggagcaactggagcagatggtaaatcagctttagagatctggaaagaacttcctggt
aatgatggaaaagacgggaaagactttttagacggattaaaaggagcaaccggagcagac
ggattagccggagcgcaaggggcgacaggagcatcagcatttgaaatctggaaagaactt
cctggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaaggagcaactgga
gcagacggattagccggagcacaaggagcaactggagcagatggtaaatcagctttagag
atctggaaagaacttcctggtaatgatggaaaagacgggaaagactttttagacggatta
aaaggagcaaccggagcagacggattagccggagcgcaaggggcaactggagcatcagca
tttgaaatctggaaagagcttcctggaaatgacggaaaaacaatcgaagaattcttagca
ggtataaaaggagcaaccggagcagacggattagccggagcacaaggggcaactggagca
tcagcatttgaaatctggaaagaacttcctggaaacgatggtaaaacaatcgaagaattc
ttagcaggtataaaaggagcaactggagcagatggtaaatcagctttagagatctggaaa
gaacttcctggtaatgatggaaaagacgggaaagactttttagacggattaaaaggagca
accggagcagacggattagccggagcgcaaggggcaactggagcatcagcatttgaaatc
tggaaagagcttcctggaaatgatggtaaaacaatcgaagaattcttagcaggtataaaa
ggagcaactggagcaaacggattagccggagcacaaggagcaactggagcagatggtaaa
tcagctttagagatctggaaagaacttcctggtaatgatggaaaagacgggaaagacttt
ttagacggattaaaaggagcaaccggagcagacggattagccggagcgcaaggggcaact
ggagcatcagcatttgaaatctggaaagagcttcctggaaatgacggaaaaacaatcgaa
gaattcttagcaggtataaaaggagcaaccggagcagacggattagccggagcacaaggg
gcaactggagcatcagcatttgaaatctggaaagaacttcctggaaacgatggtaaaaca
atcgaagaattcttagcaggtataaaaggagcaaccggagcagacggattagccggagcg
caaggggcaactggagcatcagcatttgaaatctggaaagaacttcctggaaacgatggt
aaaacaatcgaagaattcttagcaggtataaaaggagcaaccggagcagacggattagcc
ggagcgcaaggggcaactggagcatcagcatttgaaatctggaaagagcttcctggaaat
gacggaaaaacaatcgaagaattcttagcaggtataaaaggagcaaccggagcagacgga
ttagccggagcgcaaggagccactggagcaaaaggagatcaaggtatccaaggtcttaga
ggagcaactggagcagacggtttagctggagcaaaaggagcaactggagctacaggaaaa
tcagcttatgaaatctgggaaagtgtaacagctaataatggaaaaacacaagcagaattc
ctgatagcaattaaaggagcaaaaggtgatcctggaattcagggagttgctggtccaact
ggaggacaaggtactcaaggtttcccaggagaacaaggagaacaaggacctcaaggtatc
ccaggtctaccaggagcaaaaggagcgactggagcaaaaggagatcaaggtatccaaggt
cttaaaggagcaaccggagcagatggattagctggagcaaaaggagcaactggagcagat
ggaagaggtattacttctacaacaattgattcaacaactggtgaaatgactattagatat
actgatggtactagtgcaaatgcaggaaatgttaaagcagtaatagatccaaaagatctt
acttcagcacaacctgaaatcttagaagtgactaatggaactggagcagtattactagat
tctagtgttaaaatccttccttccgataaagaaggtcaggtattgacaacagttacagat
ggtacaactaagacagtaaaatgggcagatcctaaatctaataatgtgatgaacattaga
acaactgctgttagtactgaagttgcagatgatgattacactattatagctgctggaatg
actggcgatatcacaatcactttaccggctgcaggaagcaacaaaggtagaattttagtg
atcaaccaaaatgatgtgagcaatgcaggtactgaactaacagttaagtttgatgtagat
gtaatttattcatctaaaattaaagctaaagaattgttagcaccattctactctgcaaca
acaggaggaactctgaaaattagtttacaatcagatggtacaaactggtatgtagtttca
tctctataa
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