Flavobacterium psychrophilum CSF259-93: FPSM_00783
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Entry
FPSM_00783 CDS
T03254
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fpc
Flavobacterium psychrophilum CSF259-93
Pathway
fpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPSM_00783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpc03019
]
FPSM_00783
03400 DNA repair and recombination proteins [BR:
fpc03400
]
FPSM_00783
Enzymes [BR:
fpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPSM_00783
Messenger RNA biogenesis [BR:
fpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPSM_00783
DNA repair and recombination proteins [BR:
fpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FPSM_00783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Beta_prop_At2g24240
TrmB
PF0610-like_N
DnaD_N
hnRNP_Q_AcD
zf-CXXC
HVO_A0261_N
HTH_69
Motif
Other DBs
NCBI-ProteinID:
AIJ37278
LinkDB
All DBs
Position
882417..884309
Genome browser
AA seq
630 aa
AA seq
DB search
MQRALQILQKHWHYDSFRPVQDTIIQSVLEGNDTFGLMPTGGGKSLCFQVPAMVNDGLCL
VISPLVALMKDQVNQLQARNIKAIALTGAIKANELINLLDNCQFGNYKFLYLSPERLEQD
WVLERIKALPISLIAIDEAHCVSQWGHDFRPSYLKIKNLKSHFNKTPFVALTASATPQVK
DDIIALLGLENPKVFQQSFARDNLGYFIIPAEDKIYKLHQILQKNPESAIIYVRNRKNCH
EYASHLSVLGHKTTFYHAGLSVKEKEANMNSWMRDEKNVMIATSAFGMGIDKPNVKTVIH
INLPENLESYYQEAGRAGRNGEKAFAVLISSPSDIIMAESQFIAVLPDTVFLKNVFVKLC
NYLRIAYGEGINEEFSFNLNQFCSYYKLPTLKTYNALQFLDRQSIISLSQEFSEKAQVQF
LIESKEVIRYISLNRDDEPIVSIILRTYPGIFDLQTNINTDFIAKKSNTTEAKVLNLLEK
LQKLQIVAYFSQKNESKITFLEVREDDRTINRVSRHLEKQNLVKKQQLQSVVNYVSNKDT
CKSKLLLQYFGETATKDCGVCSYCSNKKKATHNREEIRAKMIRILTKNPMNSRALTAMLS
VEESEILKILQQLLEHNIISINTKNEYIIR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagagcattacaaattcttcaaaaacattggcattacgattcttttagacccgtt
caggacactataatacaatctgttctcgaaggaaatgacactttcggactcatgcccact
ggtggcggaaaatcattatgtttccaagttccagctatggttaatgatggtttgtgccta
gtaatttcgcctttggttgccttaatgaaagaccaagtaaatcagttgcaagcccgtaat
ataaaagccatcgcactaacaggcgctataaaggctaatgagttaataaatttactagac
aattgtcaatttggcaactacaaattcctctatttatcgcccgaaagattagaacaagac
tgggttctagaacgaataaaagccttacccatttcgcttatagctatcgatgaagcacac
tgtgtatcgcaatggggacacgattttagaccttcttatttaaaaattaaaaacttaaaa
tctcatttcaataaaactccatttgtagcactcaccgcatcggcaacgccacaagtaaaa
gatgatattattgcattattaggattagaaaacccaaaggtttttcagcaatcctttgcc
cgagataatttagggtattttattattcctgccgaagacaaaatttataaactacatcag
attttacaaaaaaatccagaatcggctattatatatgtacgaaacaggaaaaattgtcac
gaatatgcttcacatttatcagttttagggcataaaactactttttatcatgcgggtcta
tcagtaaaagaaaaagaggccaatatgaattcttggatgcgggacgaaaaaaacgttatg
atagccactagtgctttcggaatggggattgataagcccaatgtaaaaacagttatacat
attaacttacccgaaaatttagaaagttactaccaagaagcaggacgagcaggacgaaac
ggagaaaaagcttttgctgttttaataagttcgccctcggatattattatggccgaaagc
cagtttatagctgttttgccagatactgttttcttgaaaaatgtttttgtaaaactttgt
aattatctcagaatcgcttatggggaaggaattaatgaagagttttcttttaatttgaat
caattttgtagttattataaattaccaacattaaaaacctacaatgcacttcagtttcta
gatcggcaaagtatcatttctctttcgcaagaattttcggagaaagcacaagttcaattt
ttaatagaatctaaagaagttattagatatattagtttaaatcgtgatgacgagccaatt
gtttcaataattttaagaacttatccaggtattttcgatttgcaaaccaatattaatacc
gattttattgcaaaaaaatcaaatacaaccgaagctaaagtattaaatttgttagaaaaa
ttgcaaaaattgcaaatagttgcttatttttcacaaaaaaacgaatctaaaataacattt
ctagaagttcgtgaagacgacagaaccatcaatcgagtttcgagacatttagaaaagcaa
aatttagtcaaaaaacaacaattacaatcagttgtaaactacgtttctaataaagatact
tgtaaaagcaaattacttttacaatattttggagaaacagcgactaaggattgtggcgtt
tgttcttattgtagcaataaaaaaaaggcaacacataatagggaagaaattagagctaaa
atgattaggatattgaccaaaaacccaatgaattctagagcattaaccgcaatgttatct
gtcgaagaatctgaaatattaaaaatattgcagcaattgttagaacataacatcattagc
atcaatacaaaaaatgaatatataataagataa
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