Flavobacterium psychrophilum CSF259-93: FPSM_00883
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Entry
FPSM_00883 CDS
T03254
Name
(GenBank) Exonuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fpc
Flavobacterium psychrophilum CSF259-93
Pathway
fpc03030
DNA replication
fpc03430
Mismatch repair
fpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPSM_00883
03430 Mismatch repair
FPSM_00883
03440 Homologous recombination
FPSM_00883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpc03032
]
FPSM_00883
03400 DNA repair and recombination proteins [BR:
fpc03400
]
FPSM_00883
Enzymes [BR:
fpc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FPSM_00883
DNA replication proteins [BR:
fpc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FPSM_00883
DNA repair and recombination proteins [BR:
fpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FPSM_00883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
GIY_YIG_2
RNase_H_2
DNA_pol_A_exo1
CTI
DUF7508
DUF2430
Motif
Other DBs
NCBI-ProteinID:
AIJ37378
LinkDB
All DBs
Position
complement(994591..995970)
Genome browser
AA seq
459 aa
AA seq
DB search
MTLKLKMYAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQFISLVNPEIPIQPFVVKLT
GINNAMLVSAPKFHEVAKRIVEITKDCIIVAHNTVFDYRILRTEFSRLGYDFQAKTLCTV
ELAKILIPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLFKMLLDKDLEKIIVKEQI
KTEITKGIAPKLLNIIESLPNKTGVYYIHKENGTIIFIGKSRNIKKRVNQHFTGITKSAL
KIQQEVFTVTYQETGSELIALLKETEEIKRNRPIYNRISPKTHFPVAIYCEKDANGYLNL
KLQKFDGRKKEITAYTSLQEGKNNLFRITSQYNLCQKLTGLYETKTHCFQQKINECDGAC
IGKITPQEYNKRVQEFITKSTLENQSIIIIDSGRTTREHSAVLIENGVYKGYAFFDLNYQ
ISNIQILKNLITPMPNNRDTRNIIQGYLRKNKVMKIMKF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgacattgaaattgaaaatgtacgcaatactagacatagaaacaacaggaggacaattc
aatgaagaaggaattaccgaaatcgccatctataaatttgatggtcatcaaatagtagac
caatttattagtttagtaaatcctgaaatcccaattcaaccgtttgtagtaaaacttacg
ggaataaataatgctatgttggtatctgcacccaagtttcacgaagtagccaaacgcatt
gtagaaatcacaaaagattgtataattgttgcacacaataccgttttcgattaccgaatt
cttcgcacagaatttagccgtctaggttacgattttcaagcaaaaacgctatgcacagtc
gaactagctaaaatactaattccagaacaaccctcatatagcttaggaaaattagttcga
gcactaggaatcccaataactaacagacatcgtgccgaaggagatgcactagcaacagtc
aaattatttaaaatgctgttagacaaagatttggaaaaaatcattgtaaaagagcaaatt
aaaaccgaaattaccaaaggaattgcaccaaaattattaaatattatcgaatccctgccc
aacaaaacaggcgtttactacattcacaaagaaaacggaactattatttttattggcaaa
agcagaaatatcaaaaaaagagtaaaccagcattttacaggaatcacaaaaagtgcccta
aaaatacaacaagaagtttttaccgttacttaccaagaaactggaagcgaactcatagcg
ctactaaaagaaaccgaagaaataaaaagaaaccgacctatttataacagaatatcgcct
aaaacccatttcccagtagccatatattgcgaaaaagatgccaatgggtatttgaatcta
aaattacaaaaattcgacggtcgaaaaaaagaaatcacagcctacacaagccttcaggaa
ggaaaaaacaatttattcagaataacatcacaatacaatttgtgccaaaaattaactggt
ttatacgaaacaaaaactcactgttttcagcagaaaataaacgaatgcgatggcgcttgt
ataggcaaaattacgccacaagaatacaacaaacgagtgcaagaatttattacaaaaagc
accctcgaaaaccaaagcatcatcattatagacagcggtagaaccaccagagaacacagt
gctgttctcatagaaaatggtgtatataaaggctatgcttttttcgatttaaattatcaa
attagcaatatacaaatactaaaaaacctcattacaccaatgcccaacaaccgtgacacc
cgaaatatcatacaaggctatttacgtaaaaacaaagtgatgaaaatcatgaaattttaa
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