Flavobacterium psychrophilum CSF259-93: FPSM_01105
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Entry
FPSM_01105 CDS
T03254
Name
(GenBank) ATP-dependent RNA helicase srmB
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpc
Flavobacterium psychrophilum CSF259-93
Pathway
fpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPSM_01105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpc03019
]
FPSM_01105
Enzymes [BR:
fpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPSM_01105
Messenger RNA biogenesis [BR:
fpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPSM_01105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
V-ATPase_H_N
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIJ37600
UniProt:
A0A076P1K0
LinkDB
All DBs
Position
complement(1234030..1235274)
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AA seq
414 aa
AA seq
DB search
MLFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII
HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE
QLKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHII
KEEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILV
ATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYWKDI
IKLTKAKVTTIDEHPFPWKKGAQEATKVNSSNRSGEKEKSRKSDASKKNKKRWY
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcattatcaaaaagtatacaaagagctgtttttgaagaaggt
taccttagcgcaacccctattcaagaacaatctatcccaattatattagcaggacaagac
ttaataggttgcgcacaaacaggaacaggaaaaacagccgcctttgcaattcctattatt
cataatctacacagaattgtaggttcatcaaaaaaagaaaaactaattcgcacacttgtt
gttactcctactcgcgagttggcagtacaaataggcgaaagtttcgacacttacggaaaa
tatacgaacttaaaacagctaactatttttggtggtgtatcgcaaaacccacaagtagaa
cagctaaaaagcggtatcgacattctaattgcaaccccaggaagattgctagatttacac
aaacaaggatttattaatttagaccatatgcaccatttagtgcttgacgaagccgaccaa
atgctagatatgggatttataaacgatgtaaaaaagattgtaaaactaacacctaaaaac
cgtcagaccttactattctctgcaacaatgcctattgcaattcgtgaacttgccgaaatg
ttccttacagatcccgcaacagtgcaagtagcacctgtatcctctacgatagaaacagta
gaccaacgcttgtattatgtagataaagctgacaaaagacaattattatatcatattatt
aaagaagaaaaactaagtaacattcttgttttttccagaacaaaacatggtgccgataat
attgccaaagcattaaaaaaacaagggctaaatgccgaagctattcacggagacaaatct
caaaatgcacgccaaagagctttagataattttaaaaacaaagcatgtgatattctcgta
gccacagatatcgctgctcgtggtattgatatagagtttttaccttatgtcattaatttc
gatttgcctaatattcccgaaacttatgtacacagaataggacgaaccggtcgtgcaggt
cgagaaggaatggctatttccttttgcggaaaagacgaagaaggctattggaaagatatt
ataaaactcacaaaagcaaaagttactacgatagacgaacacccatttccttggaaaaaa
ggtgcgcaagaagccacaaaagttaatagttctaaccgaagcggagaaaaggaaaaatct
agaaaatccgatgcatcaaagaagaataagaaacgctggtattaa
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