Flavobacterium psychrophilum CSF259-93: FPSM_01253
Help
Entry
FPSM_01253 CDS
T03254
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fpc
Flavobacterium psychrophilum CSF259-93
Pathway
fpc03420
Nucleotide excision repair
fpc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPSM_01253
03430 Mismatch repair
FPSM_01253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpc03400
]
FPSM_01253
Enzymes [BR:
fpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPSM_01253
DNA repair and recombination proteins [BR:
fpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPSM_01253
MMR (mismatch excision repair)
Other MMR factors
FPSM_01253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
AAA_30
PhoH
nSTAND3
AAA_11
NPHP3_N
UvrD_C
DEAD
T2SSE
AAA_22
SLFN-g3_helicase
AAA_7
PIF1
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AIJ37748
LinkDB
All DBs
Position
1379988..1381889
Genome browser
AA seq
633 aa
AA seq
DB search
MVKTGLVLEKKDEFQEIMEHIKNGNNFLLSGGAGSGKTYSLVQVIKQVIEDNPTSKVACM
TYTNAAVKEIEERVNHDNLNVTTIHDFLWDNIKHFQKDLKSTLVKLINDEDVTKIKIENE
TVPFDYFDSLEDEIQYKEYLRLKEGIISHDELLIVANSMFQRFPKLCDILKDRYQFIFID
EYQDTHKEVIEIFLTHLNQSKKKNIIGFFGDAMQSIYPDGIGNLDEYKGDEAEKVKEVKK
DQNRRNPKLVYELANRLRVNADGLIQTHSDENNAPNMSVGIVKEGNIKFAYSNDGNLQTF
RDYLGWDFSNSKETKELNLTHNLIAGKAGFRGLMEIYDRDRIIELKNKITKKIKEDNIEI
SEEATFGEVIDQVNLPVKSSTQVGQFITQNNDLYTTARNYPFTVFRKIYLDKDQLLDDKK
QDKEDENKKGSKRDHLIKHLFKIQNNISLYQNRKYNEFLRITDFRYNFKNIEQKRLLQKN
IIELIDVGDKTIEQIITEANEKGICLVDDNLMRFITEKEYVYNRVKNIRFSEFQKLYDYL
EGATPFSTQHKTKGDEFNNVLVILDNGKWNDYNFEYLFLNIGSPSVLERTQKIFYVCCTR
AKENLAVYYHNPKPTVIEKAKELFGAKNVVCLD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaacaggattagttttagaaaagaaagatgagtttcaagaaattatggaacac
atcaaaaatggtaataactttcttttaagtggtggagctggaagcggaaaaacctattct
cttgtacaagttattaaacaagttattgaagataatccaacttctaaagttgcttgtatg
acatatacaaatgcagctgttaaagagattgaagaaagagtaaatcacgacaatctaaat
gttaccaccatacacgattttctttgggataatatcaagcattttcaaaaagatcttaaa
tctactctagtaaaattaataaatgatgaagatgtaacaaaaataaaaattgaaaatgaa
actgtgccatttgattattttgatagtttagaagacgaaattcaatacaaagaatattta
cgcttgaaagaaggtattatttctcacgatgaattattaattgttgccaacagtatgttt
caacggtttccaaaactatgtgatattttaaaagaccgataccaatttatatttattgat
gaatatcaggatacgcacaaagaagtaattgaaatatttcttactcatttaaatcaaagt
aaaaagaaaaatataattggtttctttggcgatgctatgcaatctatttacccagatggt
atagggaatttggacgaatataaaggtgatgaagctgaaaaggtaaaagaagttaaaaaa
gatcaaaaccgaagaaatccaaaattggtatatgaattagcaaacagattacgagttaat
gctgatggattaattcaaacccattccgatgaaaataatgcaccaaatatgtcggtagga
atcgtaaaggagggtaatataaaatttgcttattcaaatgatggtaatttacaaaccttt
agagattatttaggatgggatttttcaaattcaaaagaaacgaaagaattaaatttaaca
cataatttaattgctggaaaagctggattcagaggtttaatggaaatatatgatcgtgat
agaataatcgagctaaaaaataagattacaaaaaaaatcaaagaagataatatcgaaatt
tctgaagaagcaacgtttggagaagttatcgatcaagtcaatttacctgtaaaatcttca
acacaagtggggcagtttatcactcaaaataatgatttatacacaactgcaaggaattat
ccatttacagtttttagaaaaatatacctagacaaagaccaattattagacgataaaaaa
caggataaagaagatgaaaataaaaaaggttcaaaaagagaccatttgataaagcatctt
ttcaaaattcaaaataatatttcattatatcaaaacagaaaatacaatgaatttttaaga
attactgatttcagatataattttaaaaatattgaacaaaaacgattattacaaaaaaac
ataattgaattaattgatgttggagataaaacaattgaacaaataattacagaagccaat
gaaaaaggaatttgtcttgttgatgataatttgatgagatttataactgaaaaagaatat
gtttataatcgagtaaaaaatataagattttctgaatttcaaaagctatatgattattta
gaaggtgctacgccattctcaactcaacataaaacaaaaggcgatgaattcaacaatgtt
ttagttattttagataatggtaaatggaatgattataacttcgaatatttgtttttaaat
attggttcaccaagtgttttagaaagaactcaaaaaatattttacgtttgttgtacgaga
gcaaaagaaaatttagctgtttactatcataatccgaaaccaacggttattgagaaggca
aaagaattatttggagctaaaaatgtggtttgtttagattaa
DBGET
integrated database retrieval system
