Flavobacterium psychrophilum CSF259-93: FPSM_01497
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Entry
FPSM_01497 CDS
T03254
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpc
Flavobacterium psychrophilum CSF259-93
Pathway
fpc03410
Base excision repair
fpc03430
Mismatch repair
fpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FPSM_01497
03430 Mismatch repair
FPSM_01497
03440 Homologous recombination
FPSM_01497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpc03400
]
FPSM_01497
DNA repair and recombination proteins [BR:
fpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FPSM_01497
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FPSM_01497
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPSM_01497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Trigger_C
Motif
Other DBs
NCBI-ProteinID:
AIJ37992
LinkDB
All DBs
Position
complement(1666488..1668176)
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AA seq
562 aa
AA seq
DB search
MRWTIKPKPAEEKVKHLVEVLNIKDFVASLLIQRGIETYDQAKTFFRPSLDDLHNPFLMK
DMDKAVRRIEKAIANNENIMVFGDYDVDGTTAVSLVSSYLKSYYKNVATYIPDRYDEGYG
ISYKGIDYADDNNITLIIALDCGIKSVEHVAYAKAKNIDFIICDHHRPGVFLPEAVAVLD
PKRPDCFYPYDELCGCGVGFKLIQALGENRNQTITDFIPYLDLVATAIAADIVPITGENR
VLAKFGLEVINTNPRPGIKALIQNIKKETLTITDVVFIIAPRINAAGRIKHGNYAVQLLT
EFNLPQAEEFATQIEIFNADRKDLDKQITKEALQQIENNKEENNFTTVVYQEDWHKGVIG
IVASRLIETHYKPTIVFTKSGDKLAASARSVKDFDVYNALEESAAFLEQFGGHMYAAGMT
LKEENYKKFKNKFEEVVKNSIQPDLLIPEIAIDAELKLSDINEKLVRILKQFEPFGPENM
TPVFISKNINDTGYAKTLGKDEEHLRLFVKQNNSEGFAAIGFNLANKKALTENQKPFDAV
YYIDENIWNGNVTLQLRLRDIN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacaattaagccaaaacctgctgaagaaaaagtgaaacatctggtagaagtg
ctaaatattaaagattttgtagcttcattgctaattcaacgcggaattgagacatacgac
caagccaaaacattttttcgtcctagtttagatgatttgcacaatccatttttaatgaaa
gatatggataaagccgttcgacgaatagagaaggcgattgcaaataacgaaaatatcatg
gtttttggagattatgatgttgacggaacaaccgcagtttcattagtttcgtcttactta
aaatcctattacaaaaatgtagccacttatattcctgatcgttacgatgaaggttacgga
atctcatataaaggtatcgattatgccgatgataataatatcacacttattattgcacta
gattgtggcataaaatcggtagagcatgtggcttatgccaaagcaaaaaacatcgatttt
attatttgcgaccaccaccgtccaggagtgtttttgccagaagcagttgctgttttagac
cctaaacgacccgattgcttttatccttacgacgaactttgtggttgcggggttggcttt
aaattaatacaagctttgggtgaaaaccgaaaccaaaccatcacagattttattccgtat
ctagacttggttgccactgcaattgctgccgatattgtacctataactggtgaaaataga
gttttagcaaaatttggcttagaagtaattaatacaaatcctagaccaggaattaaggct
ttaatacaaaatattaaaaaagaaacactcacaattaccgatgtcgtttttatcattgca
ccaagaataaatgctgcgggacgaataaaacatggtaattatgctgttcaattattaaca
gaatttaatttgccacaagcagaagaatttgccacacaaatagaaatttttaatgctgac
agaaaagatttagacaaacaaatcaccaaagaagcattgcaacaaatagaaaataataaa
gaagaaaataactttacaactgttgtttaccaagaagattggcacaaaggagttatagga
attgtagcctctagactcatagaaacacattataaaccaacaattgtttttacaaaaagc
ggcgataaattagcagcttcggcacgttctgttaaagattttgatgtttataacgctcta
gaagaaagtgcagcattcctagaacagtttggcgggcacatgtatgccgcagggatgact
ctaaaagaagaaaattataaaaaatttaaaaataaatttgaagaagttgttaaaaatagt
attcagccagatttgcttattccagaaattgctattgatgccgaacttaaattatccgat
ataaatgaaaaattagtccgtattttaaagcaattcgaaccctttggtccagaaaatatg
actcctgtttttatatcaaaaaatataaacgatacgggttatgctaaaactcttggtaaa
gacgaagagcatttgcgattgtttgtaaaacaaaataatagtgaaggatttgctgctatt
ggttttaatttagccaataaaaaagcacttacagaaaatcagaaaccatttgatgcagta
tattatattgatgaaaatatttggaatggaaatgtaactttgcaattaagactacgagat
ataaactaa
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