Fusobacterium pseudoperiodonticum: CTM68_04350
Help
Entry
CTM68_04350 CDS
T05232
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTM68_04350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpd03021
]
CTM68_04350 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpd03400
]
CTM68_04350 (rpoC)
Enzymes [BR:
fpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTM68_04350 (rpoC)
Transcription machinery [BR:
fpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTM68_04350 (rpoC)
DNA repair and recombination proteins [BR:
fpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTM68_04350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ATV56994
LinkDB
All DBs
Position
complement(849273..853235)
Genome browser
AA seq
1320 aa
AA seq
DB search
MGIRSFDKIRIKLASPEKILEWSHGEVTKPETINYRTLNPEKDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESILYFARYIVTSSEEDSIKVGKILTEKEYKLLKQTYPNKFEAYMGADGILKLLTA
IDLEALRDELENELIDVNSAQKRKKLVKRLKIVRDFISSGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKDRDGEKGEGKFFSNLDQVITAYQNDKVGTHAKIKVR
INGELVETTPGRVLFNEILPEVDRDYSKTYGKKQIKALIKSLYEVHGFTETAELINRVKN
FGYHYGTFAGVSVGIEDLVIPPEKKTLLKQADDEVTQIEKDYKSGKIINEERYRKTIEVW
SRTTQAVTKAMMDNLDEFNPVFMMATSGARGNTNQMRQLAGMRGNMADTQGRTIEAPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVDAAGIVIEELKERINGRVLAEDLVHNGKTIAKRNTMIHKELLKKIEDLGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATIVNAKKAENDGEVSFRDIKTIEINGEDVVVSQGGKIIIADNEHEVDSGSVIKVREGQ
HVKEGDILVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSTESEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKIGEGTKDITGGLPRVQELF
EARNPKGKAILSEIDGRIEILPTKKKQMRVINVRSLTNPDNFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDVLSIKGLVAAEQFILESVQQVYREQDVSVNDKHIEIIVKQMFRK
VRIVDSGASLYLEDEIIEKRIVDLENKKLAEEGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKAIKVKYSSEEEKAEEE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgataaaattagaataaaattagcctctcctgaaaaaatatta
gaatggtctcatggagaagtaacaaaacctgagactatcaattatagaactttaaatcca
gaaaaagatggattgttttgtgaagtaatatttgggccaacaaaggattgggaatgttct
tgtggaaaatataagagaatgagatataaaggcctagtttgtgaaaaatgtggagtagaa
gtaacaagagctaaggttagaagagaaagaatgggacatataactctagcttctcctgta
tctcatatttggtattctaaaggaagtccaaataagatgtctttaattattggtatttct
tctaaagaattggagtcaattttatattttgcaagatatatagtaacttcaagtgaagaa
gattctataaaagttggaaaaatattaactgaaaaagaatataaattattaaagcaaaca
tacccaaataagtttgaagcttatatgggagctgatggaatcttaaaacttttaacagct
attgatttagaagctttaagagatgagctagaaaatgaattaatagatgtaaattctgct
caaaagagaaagaaattagtaaagagattaaaaatagttagagacttcatttcatcagga
aatagacctgaatggatgatacttacaaatgttccagtaattccagctgaattaagacca
atggttcaacttgatggaggaagatttgcaacatctgacttaaatgatctatacagaaga
gtaataaacagaaataatagacttaaaaaattattagaaataaaagctccagaaattgtt
gtaaagaatgaaaaaagaatgttacaagaagctgtggacgctcttatagataatggtaga
agaggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aaaggaaaacaaggaagattcagacaaaacttactaggaaaaagagttgactactcagcg
agatcggttatcgttgttggaccatctttaaagatgaatcaatgtggtatacctaagaaa
atggctcttgaattatataaaccatttataatgagagagttagtaagaagagaattagct
aataatataaaaatggctaaaaaattagttgaagaatctgatgataaagtatgggcagta
atagaagatgttatagcagatcaccctgttttactaaacagagcccctacactacacaga
ttatcaatacaagctttccaacctgtattgatagaaggtaaagctataagattacaccct
ctagtttgttcagcattcaacgctgacttcgacggagaccaaatggctgtacacttaact
ttatctcctgaatcaatgatggaagcaaaacttttaatgtttgctcctaacaatatcata
tcaccatcaagtggagaacctatagctgttccttcacaagacatggttatgggatgtttc
tatatgactaaagatagagatggagaaaaaggagaaggaaaattcttctcaaatcttgat
caagtcataacagcataccaaaatgataaagttggaactcatgctaaaataaaggttaga
attaatggtgaattagtggaaacaactccaggaagagttttattcaatgaaattttacct
gaagtagatagagactatagtaaaacttatggtaaaaaacaaataaaagccttaattaaa
tctttatatgaagtacatggatttactgaaacagctgaacttataaacagagttaaaaac
tttggatatcactatggtactttcgctggggtttcagttggtattgaagacttagtaatt
ccaccagaaaagaaaactttattaaaacaagcagatgatgaagttactcaaatagaaaaa
gattataaatctggaaaaattataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaacaactcaagcagttactaaagcaatgatggataacctagatgagttcaaccca
gttttcatgatggcgacttcaggagccagaggtaatactaaccaaatgagacagttagca
ggaatgcgtggaaacatggcagatacacaaggtagaacaatagaagcacctatcaaagct
aacttcagagaaggactaacagtattggaattctttatgtcttcacacggagcgagaaaa
ggacttgccgatacagctctaagaactgccgattcaggatacttaacaagaagacttgtt
gatatttctcatgaagttatagttaatgaagaagattgccatactcatgaaggaatagaa
gttgaagcactagtagatgctgctggtatagtaatagaagaattaaaagaaagaataaat
ggtagagttttagcagaagatctagttcataatggaaagacaattgctaaaagaaatact
atgattcataaagaattacttaaaaagatagaagatttaggaattaagaaagtaaaaatc
agatctcctttaacttgtgctttagaaaaaggagtttgtcaaaaatgttatggtatggac
ttatcaaactacaatgaaatcttactaggggaagctgttggagtagttgctgctcaatca
ataggagaacctggtactcagcttacaatgagaaccttccatacaggaggggttgcagga
gctgcaacaatagtaaacgctaaaaaggctgaaaatgatggagaagtttcatttagagat
atcaaaactattgaaatcaatggtgaagatgtagtagtaagccaagggggaaaaattatt
attgctgacaacgaacacgaagttgactcaggttcagtaataaaagttagagaaggacaa
catgtaaaagaaggagatatccttgttacatttgacccttaccatatccctataatttca
tctcatgatggtaaagttcaatatagacactttactcctaaaaatataagagatgaaaag
tatgatgtacatgaatatctagttgtaagatcagttgatagcactgagtctgaaccaaga
gtacatatacttgataagaaaaatgaaaaattagctacttataacataccttatggagca
tatatgatggtaagagatggagctaaagttaaaaaaggtgacatcatagctaaaatcatc
aaaatcggagaaggtactaaggacatcacaggaggtctaccaagagtacaagaactattt
gaagctagaaatccaaaaggaaaagctatactttctgaaatagatggaagaatagaaata
ttaccaactaagaagaaacaaatgcgtgttatcaatgttagatctttaacaaatcctgat
aattttaaagaatatttaattccaatgggagaacgtctagttgttactgatggattaaag
ataaaagcaggagataaaatcacagaaggagctatttctccttatgatgtattaagtata
aaaggactagttgctgcagaacaatttatactagaatctgtacaacaagtttatagagaa
caagacgtttcagttaatgataaacatatcgaaattattgttaaacaaatgtttagaaaa
gttagaatagttgattcaggagcttcactatatcttgaagatgaaattatcgaaaagaga
atagtagaccttgaaaataaaaaattggctgaagaaggaaaagcacttattaaatatgaa
ccagttatacaaggtatcacaaaggccgctgtaaatactggaagctttatatctgctgct
tcattccaagaaacaacaaaagttctatctaatgctgctattgaaggaaaagttgactat
ctagaaggattaaaagaaaatgtaatcttaggtaagaaaattccagcaggaacaggattt
aacaaatataaagctataaaagtaaaatatagcagtgaagaagaaaaagcagaagaggaa
taa
DBGET
integrated database retrieval system
