Fusobacterium pseudoperiodonticum: CTM68_05235
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Entry
CTM68_05235 CDS
T05232
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTM68_05235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpd03400
]
CTM68_05235
Enzymes [BR:
fpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTM68_05235
DNA repair and recombination proteins [BR:
fpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTM68_05235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
CLZ
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATV57130
LinkDB
All DBs
Position
complement(1005220..1008159)
Genome browser
AA seq
979 aa
AA seq
DB search
MEKKFRGEIPFWLKNKKNSIVYVCSSNRNIDDYFFVLKDFYKGRILRIKKENENGELKKY
NYDLLELLKSDEKFIILISLEYFLEDYYSKANSIFIEKGKEVDIKALEEKLIEAEFEKTY
MLTQRKEYSIRGDILDIFNINQENPVRIEFFGNEVDRITYFDLNSQLSIEKLDSIELYID
NNKDKKDFFSLMYTNKNKVEYYYENNDILQAKIKRLISENSDRENDIINKITELSKIGKQ
TEIQKFTEEELKQFEVIDRIKKLSENTNIIIYSEEATRYKEIFKGYDVKFEKYPLFEGYR
TEDKLILTDREIKGIRVKRERVEKKALRYKNVDEIAEQDYVIHENFGVGIFLGLENIDGQ
DYLKIKYADEDKLYVPLDGINKIEKYINISDVIPEIYKLGRKGFRRKKARLSEDIEIFAK
EIIKIQAKRNLANGFKFSKDTVMQEEFEEAFPFTETSGQLKAIEDVKRDMESGKVMDRLV
CGDVGYGKTEVAIRAAFKAIMDEKQVVLLVPTTVLAEQHYERFSERFKNYPINIEILSRV
QTKKEQEESLKKIENGSADLIIGTHRLLSDDIKYNDIGLLIIDEEQKFGVKAKEKLKKLK
GDIDILTLTATPIPRTLNLSLLGIRDLSIIDTSPEGRQKIQTEYIDNNKDLIRDIILTEV
SREGQVFYIFNSVKRIEMKSKELRELLPEYIKVDYIHGQMLARDIKRAIHNFENGNTDVL
IATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTRNAQ
KREESIREFDNLTGIDLSMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNEEILKLKC
ENEEELEDVNIELNFPRFLPDNYIEKNEKIKIYKRALALKTFEELEDLHKELEDRFGRLK
SEAKGFFEFLKIRIRARELGIVSIKEDKEKRLLINFNEEKINVDKIIYLLANKKISYLKF
TQTIGFEGDIFEFFDLYSN
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaatttagaggagaaataccattttggctaaaaaataaaaagaatagcata
gtctatgtctgttcatctaatagaaatatagatgattatttttttgtgctaaaagatttc
tataaaggaagaattctcagaataaaaaaagagaatgaaaatggagaactaaagaaatat
aattatgatctattagaacttctaaaatcagatgaaaaatttataatcttaatctcttta
gaatattttttagaagattattattctaaggctaacagtatttttattgaaaaaggaaaa
gaagtagatataaaagctttggaagaaaagttgatagaagcagagtttgaaaaaacatat
atgcttactcaaagaaaagaatattcaataagaggggatatcttagatatttttaatatc
aatcaagaaaatcctgtgagaatagaattttttggaaatgaagttgatagaataacatat
tttgacttaaattctcaattaagtattgaaaaattagacagtatagaactgtatatagac
aataataaagataaaaaagatttcttctctcttatgtatacaaacaaaaataaagtggaa
tattactatgaaaataatgatattttgcaagcaaaaataaagaggcttatcagtgaaaat
tcagatagagaaaatgacataataaacaaaataacagaactctctaaaataggaaagcag
acagaaatacaaaaatttacagaagaagaattaaagcagtttgaagttatagacagaata
aaaaaattatctgaaaacacaaatataataatttactcagaggaagccacaagatacaaa
gaaatatttaagggctatgatgttaaatttgaaaagtatccactttttgaaggatataga
actgaagataaactaatactgacagatagagaaataaaaggtataagagtaaaaagagaa
agagttgaaaagaaggcattaagatataagaatgttgatgaaatagcagaacaagactat
gtaatacatgaaaattttggtgtaggaatattcttaggtctagaaaatattgatggacag
gattatttaaagataaaatatgcagatgaagacaagttgtatgttcctcttgatggtata
aataagatagaaaagtatattaatatttctgatgttatacctgaaatatataaacttgga
agaaaaggttttagaagaaagaaagctagattaagcgaagatatagaaatctttgctaaa
gaaataataaaaattcaggctaaaagaaatttagcaaatggatttaagttctcaaaagac
actgttatgcaggaagaatttgaagaagcctttccatttactgaaacttcaggtcaatta
aaggctattgaagatgttaaaagagatatggagtcaggcaaagttatggatagacttgtt
tgtggagatgttggttatggtaagacagaggttgctataagagcagcttttaaagctata
atggacgagaaacaagttgtactcttagttcctactactgtactggcagagcagcattat
gaaagatttagtgaaagatttaaaaattatcctataaatatagagattttaagcagagta
cagactaaaaaagagcaggaagaaagtcttaaaaagatagagaatggctcagctgactta
atcataggaactcatagattattgtcagacgatataaagtataatgatataggccttctt
ataatagatgaggagcaaaagtttggagttaaagccaaggaaaagttaaaaaaactcaaa
ggtgacatagatatcctaactttaacagcaactcctattcctagaactctaaatttatct
ttattgggaattagagatttatctattatagatacttctccagaaggaagacaaaaaatt
caaacagagtatatagacaataataaagatttaattagagatattatacttactgaagtt
tcaagagaaggacaggttttctatatctttaactcagtgaaaagaattgagatgaagtca
aaagaacttagagaacttttacctgaatatataaaagttgactatatacatggtcagatg
ttggcaagagatataaagagagctatacataattttgaaaatggaaatacagatgtttta
attgcaacaactattatagaaaatggtattgatatagaaaatgctaatactatgataatt
gaaggagttgaaaagttaggactatcccaagtttatcagcttagaggaagaataggtaga
agcaataagaaaagttattgttatatgcttatgaacgaaaataaaactagaaatgcacag
aaaagagaagaaagtattagagaatttgacaatctaacaggtatagatctatcaatggaa
gactcaaaaattagaggagttggagaaatcttaggtgaaaagcaacatggagcagttgaa
acctttggttataatctatatatgaaaatgttgaatgaagaaatattaaaattaaaatgt
gaaaacgaagaagaattagaagatgttaatatagaacttaatttcccaagatttttacct
gataattatatagaaaaaaatgaaaaaataaagatttacaagagggctttagctttaaaa
acttttgaagaattagaagatctacataaggaattggaagatagattcggaagattaaaa
tctgaggcaaaaggattctttgaatttttaaaaattagaataagagctagagagctagga
attgtaagtataaaagaagataaagaaaaaaggcttttaattaattttaatgaagaaaaa
ataaatgtcgacaaaattatttatctattagctaataagaaaataagctatttaaaattt
actcaaactatagggtttgaaggagatatttttgagttttttgatttatattctaattaa
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