Fusobacterium pseudoperiodonticum: CTM68_05505
Help
Entry
CTM68_05505 CDS
T05232
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTM68_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpd03019
]
CTM68_05505
03009 Ribosome biogenesis [BR:
fpd03009
]
CTM68_05505
Enzymes [BR:
fpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTM68_05505
Messenger RNA biogenesis [BR:
fpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTM68_05505
Ribosome biogenesis [BR:
fpd03009
]
Prokaryotic type
rRNA helicases
CTM68_05505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_22
Cas3-like_C_2
2H-SAK
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATV57176
LinkDB
All DBs
Position
1066029..1067615
Genome browser
AA seq
528 aa
AA seq
DB search
MEQLEKLKEFRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKT
AAFSLPIIENFEHSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQR
KLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTND
DKRMLFFSATMPPEIMKIAKTHMKEYEVLTVKSRELTTDLTEQIYFEVNERDKFEALCRI
IDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINIL
VATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQKAVKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENI
VASLLKLTYSDVLDESNYNEISPVKMEDTGKTRLFIAMGRKDGMTPKKLVDFIVKKAKVK
QAYIKNAEVYDAFSFVSVAFKEAEIIVEAFAEIRKGKKPLIEKAKSKK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattagaaaaattaaaagaatttagggaattagggcttggtgaaaaggtatta
aaggtattatcaaaaaagggatatgaatctcctacacctatacaaagattaacaatacca
gcactgttaaaaaatgataaagatataataggacaagcacagactggaacaggtaaaact
gctgctttttctttacctataatagaaaactttgaacattcagatcacatacaagcaata
gttttaactccaacaagagaattagctttacaagtagctgaagaaatgaatagtttaagt
acaagtaaaaaaatgaaggtaatccctgtttatggtggacaatctatagacatacaaaga
aaacttataaaaacaggggtagatgttgttgttggaactccaggaagagttatagattta
attgaaagaaagttattaaagctaaactcattaaagtatttcgttttagatgaagcagat
gaaatgcttaatatgggatttgttgaagatattgaaaagatcttaacatttacaaatgat
gataagagaatgctattcttctcagcaactatgccaccagaaataatgaaaattgcaaaa
actcatatgaaagagtatgaagtgttaacagtaaagagtagagaattaacaacagactta
acagaacaaatatattttgaagttaatgaaagagataagtttgaagctctatgcagaata
atagacttaacaaaagaattctatggaataattttctgtagaactaagacagatgtaaat
gaaatagttggaagattaaacgatagaggttatgatgctgaaggtctacatggagatata
ggacaaaactacagggaagtaacattaaaaagatttaaaactaagaagataaatattctt
gttgcaactgatgttgctgctagaggaatagatataaatgatctaagccatgttataaac
tatgctatacctcaagaagttgaaagttatgttcacagaataggaagaacaggtcgtgct
ggaaaagaaggtactgctataacttttataactcctcaagagtatagaagacttttacaa
atacaaaaggcagttaaaaaagaaattagaaaagaaagtttacccgatgtaaaagatgtt
attcaagctaaaaagtttagaataatagatgacatagggcaaattttaatagataatgac
tatgataagtttaaaaaattagctaaagatttattaaatatggaagaagcagagaatata
gttgcctctctattaaaattaacatatagtgatgttttagatgaaagtaattacaatgaa
atatctccagttaagatggaagatacaggtaaaacaagacttttcattgctatgggtaga
aaagatggaatgactccaaagaaattagttgatttcatagttaaaaaagctaaggtaaaa
caagcttatataaaaaatgcagaagtctatgatgccttctcttttgtttcagttgcattt
aaagaagctgaaataatagttgaagcttttgctgaaattagaaaaggtaaaaaaccgttg
atagaaaaagcaaaatctaagaaataa
DBGET
integrated database retrieval system
