Fusobacterium pseudoperiodonticum: CTM68_08275
Help
Entry
CTM68_08275 CDS
T05232
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03410
Base excision repair
fpd03430
Mismatch repair
fpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CTM68_08275 (recJ)
03430 Mismatch repair
CTM68_08275 (recJ)
03440 Homologous recombination
CTM68_08275 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpd03400
]
CTM68_08275 (recJ)
DNA repair and recombination proteins [BR:
fpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CTM68_08275 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CTM68_08275 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTM68_08275 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Tsr1_G-like
Motif
Other DBs
NCBI-ProteinID:
ATV57665
LinkDB
All DBs
Position
complement(1644590..1647148)
Genome browser
AA seq
852 aa
AA seq
DB search
MKKNTKWLLENKINYERIFENKGERKLDFVIESLIENRNLSLDTNFDFNPFDLKDIDIAV
KRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELGGNIHYYIPLRDEGYGLNKDAIQ
SLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVINPKREENI
YSYKYLAGVGTAFMLIYALYSKLDRLNDLEKFLDIVAIGTVADIVPLTSDNRKFVKRGLK
LLNNTKWIGIKQLLRKVFPDDWDTREYCSYDVGYLIAPIFNAAGRLEDAKQAVSLFIEED
GFECLTIIEQLLENNNERKNIQKKILEASIAEIEKKQLYNKNLILVANKSFHHGVIGIVA
SKILDKYYKPSIIMEIKESEGVATASCRSIDGLNIVECLNSVSDILVKYGGHSGAAGFTI
KIENIEEFYQRVDKYIGENFPKDLFIKTIKIENILAPYKVNYEFLRELEILEPYGAKNHT
PIFAFKNCEYENLRFTRNSTEHLMLDIKKDNYYFKNCIFFGGGDYYDIIANSKKIDVAFK
LKLETFKDRYMCKLQLEDVKNSMENTDFNDNYLELNGRDISFPIRTVVYPKRPDIDNPLN
LVFNDYGLAITKDRTIIENIDVNLANILKVLKNEFNYNFSVEIEKKYLKTENINLHLKID
IDKDIILKTFPVKDALIFQEIKKELISDFDYNSIQKKVLASIFKDKKATLVVMEKGRGIR
TIIETIKKYYLYKGKTISINDVSKKADFYIFTFDFENEVKLENIMRTLEKINSNNVLIIT
NKEFELPKFNTIKDEYTVAKNIEYITYDEIDKIKKSDNFYYPFLTDEEKMKILALLNKEE
KIFSTKEINIHL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaatactaaatggcttttagaaaataaaataaattatgaaagaatttttgaa
aataaaggagagagaaaattagacttcgttattgaaagtttaattgaaaatagaaattta
tctcttgatacaaattttgatttcaatccttttgatttaaaggatatcgacatagcagta
aaaagaatctttgaagctattgaaaacaatgaaaaaatttatatctatggtgactatgat
gtcgatgggataacttctgtttctcttttatacttggctctttcagaattaggtggaaat
atacactactatattcctttaagagatgaaggttatggactaaataaagatgccatccaa
agtttaaaagaagaagaagctaacctagttataagtgttgactgtggtattaattcaata
gaagaaattaattttgctaatgaattaggtttagattttatcataactgaccaccatgag
ataattggtgacttaccaaaggcttttgctgttataaacccaaaaagagaagaaaatatc
tatagttataagtacttagcaggggttggaacagcctttatgcttatctatgcactatat
agcaagttagatagactaaatgatttagaaaaattcttagatattgttgccataggtact
gttgctgatatagttcctttgacttctgacaatagaaaatttgtaaaaagaggtttaaaa
cttttaaataacactaagtggatagggattaagcaactgttaagaaaggtttttcctgat
gattgggacactagagaatactgttcttatgatgtaggttaccttattgcacctattttc
aatgctgccggacgtttagaagatgcaaaacaagctgtaagtctatttattgaagaagat
ggttttgaatgtctaactatcatagagcaacttttagaaaataacaatgaaagaaaaaat
attcaaaagaagattttagaagcttctattgctgaaattgaaaaaaagcaactttacaat
aaaaacttaattctagttgccaataagtcctttcatcatggagttataggaatagtcgct
tcaaaaattctagataaatattataagccaagtataattatggaaattaaagaaagtgaa
ggagttgcaacagcttcttgtagaagtattgatggtttaaatatagttgaatgcttaaat
tctgtttctgatatcttagttaaatatggtggccactcaggagcagcaggtttcacaata
aagattgaaaatatagaagaattctatcaaagagttgataaatatattggtgaaaatttc
cctaaagacttatttattaagactataaaaattgaaaatatacttgcaccttacaaagta
aattatgaatttttgagagaattagaaatcttagagccttatggtgccaaaaatcatact
ccaatttttgcttttaaaaattgtgaatatgaaaatttaagatttacaagaaatagtaca
gaacatttaatgctagatataaagaaagataactactatttcaagaattgtattttcttt
ggtggtggagattattacgatataatagctaattcaaagaaaattgatgtggcttttaaa
ttaaaattagaaacttttaaagatagatatatgtgtaaacttcaacttgaagatgttaaa
aattctatggaaaacacagattttaatgataattacttagaattaaatggtagggatatt
tccttccccatacgtactgtagtctatcctaaaagacctgatatagataatcctttaaac
cttgtttttaatgactatggacttgctattactaaggatagaactattattgaaaatata
gatgttaacctagccaatattttaaaagttttaaaaaatgagtttaactataatttttct
gtagaaatagaaaaaaaatatttaaaaactgaaaatataaatttacatttaaaaattgat
attgataaagatattattttaaaaactttccccgtaaaagatgctttaatatttcaggaa
ataaagaaggaattaatttctgactttgactacaactcaatacaaaagaaagttttagct
tcaatttttaaagataaaaaagctactcttgtagttatggaaaaaggaagaggtataaga
actataattgaaactataaagaaatattatctatataaaggaaagactatttctattaat
gatgtttctaaaaaagctgatttctatatatttacttttgattttgaaaatgaagttaag
ttagaaaatattatgcgaactctagagaaaattaattctaataatgtattgattattaca
aataaagaatttgaacttccaaaattcaatactattaaagatgaatacactgttgctaaa
aatattgaatatataacttatgatgagatagataaaattaaaaagtctgataatttttat
tatccttttttaacagatgaagaaaaaatgaaaattttagctttactaaataaagaagaa
aagattttttcaacaaaagaaattaatatacatttataa
DBGET
integrated database retrieval system
