Fusobacterium pseudoperiodonticum: CTM68_08625
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Entry
CTM68_08625 CDS
T05232
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03420
Nucleotide excision repair
fpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTM68_08625
03430 Mismatch repair
CTM68_08625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpd03400
]
CTM68_08625
Enzymes [BR:
fpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTM68_08625
DNA repair and recombination proteins [BR:
fpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTM68_08625
MMR (mismatch excision repair)
Other MMR factors
CTM68_08625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
Cas_Cas4
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
Helicase_RecD
PhoH
CowN
DEAD
DUF2800
Motif
Other DBs
NCBI-ProteinID:
ATV57732
LinkDB
All DBs
Position
complement(1709209..1711998)
Genome browser
AA seq
929 aa
AA seq
DB search
MSIVNEKKSELNERQLEAVNTVKGPVVIIAGPGTGKTKTLVERTVNILVNEKVEAKKIMI
TTFTNKAARELELRINESLEKANVNIDISDMYIGTMHSIWTRLIEENITYSDFFDNFELM
SGDYEQHFFIYSRLKEYKKLEDYQKFFDNLSNNTGKYQGDWARSSFLKNKINDLNENAID
IENIQTSDVYINFIKEAYKLYIKQLYEANIVDFSYLQVEFFNMLVKNKEFLEKINHDFEY
IMVDEYQDSNKIQEKILLLISKTRKNICVVGDEDQSIYRFRGASSENILNFPKHFSEDEC
KIIILEENYRSVTDIVEFNNKWISSIDWQGNRFDKNIVSMRDTDILGKNVFHISGKTMDE
NIKNTVIFIKKLKQHNKITNYNQIAVLFANFKNNSAKKLEGALKKENIEVYSPRTKVFFE
MYEIKLTLGIILACFKKYFPEDSIDEYLTECIAFARTEIKKDSDFLVWIKEKIENISEES
FDSLNEIFYEFLNFTYYKNVLNEETPVDSRANHNLAILSKIFKNFEKYVHYRKISAEDDF
SVVKYFFTGYLDILKESRVDEIFSEEDYPNECIPFLTIHQSKGLEFPVVIVFSLNSKPNR
YEDDDISRQTSIDRLINSSSKLSENDKEKFDFYRKFYVAFSRAKNLLVLSSYEMGVSENF
KPFFYSIRGVNSLQFDINEVNLDEVTKKDERKILSYTTDIAPYRHCPMKYYLVREKEYST
FSKKIFNLGIITHKAIEHINKLFLQKKNPFLDNEYIENLLKNIYKFQNIDLDDNLERIMS
IVKKYIEDEKYNFEYIKKVEASEFRIENDYILYGQIDLILEDENEIQIIDFKTGKYDEFE
YSSNYRQQLSLYKLLLQKKYDKDIKTYLYYLEEDEPKKEILITDEELEEDFKNINKTTQD
ILDNKFPKIPYNHNICGICEFKNYCWGLE
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatagtaaatgaaaaaaaatctgaactgaatgaaagacaacttgaagcagttaat
actgttaagggtcctgttgtaataatagcaggacccggaacaggtaaaactaagactctt
gttgaaagaactgttaatatacttgtaaacgaaaaagtagaagctaaaaaaattatgata
actacttttacaaataaagcagctagagaactagaacttagaataaatgaaagtttggaa
aaggcaaatgtaaatatagatataagtgatatgtatataggaactatgcactctatatgg
actagacttattgaagagaatattacctattctgatttctttgataacttcgagcttatg
agtggagactatgagcaacattttttcatttactcaagattaaaagaatataaaaaattg
gaagattatcaaaagttttttgataatctttctaataatactggaaaatatcaaggagat
tgggctagaagttcttttttaaagaataaaataaatgatttaaatgaaaatgccatagat
attgaaaatatacaaacaagtgatgtctatataaacttcataaaagaagcatataaacta
tatataaaacaactttacgaagctaatattgttgatttttcatatttacaggttgaattt
ttcaatatgcttgtaaaaaataaggaatttttagaaaaaataaaccatgactttgaatac
ataatggtagatgagtatcaagatagtaataaaattcaagagaaaatattacttctaatt
tcaaaaactagaaagaatatctgcgttgttggagatgaagatcaatctatatataggttt
agaggagctagttctgaaaatattttaaatttccctaaacatttttctgaagatgaatgt
aaaattataattttagaagaaaattatcgttcagtaactgatatagttgagtttaataat
aaatggatttcatctatagattggcaaggaaatagatttgataagaatatagtatctatg
agagatacagatattttaggaaaaaatgtttttcatatctcaggaaaaactatggatgaa
aatatcaaaaatactgtaatttttataaaaaaattgaaacaacataataaaattacaaac
tataatcaaattgcagtcctatttgcaaatttcaaaaacaattctgcaaagaaattagaa
ggcgctttaaagaaagaaaatatagaagtttattctcctagaacaaaagttttttttgaa
atgtatgagataaaactaactttaggaataattttagcttgtttcaaaaaatattttcca
gaagatagcatagatgaatatttaactgaatgtatagcttttgcaagaacagaaataaaa
aaagatagtgattttttagtttggataaaagaaaaaattgaaaatatttcagaagaaagt
tttgactctttaaatgaaattttctatgaatttttaaatttcacttactataaaaatgta
ttaaacgaagaaactcctgttgattcaagagctaatcataatttagctatacttagtaaa
atatttaagaatttcgaaaagtatgtacattatagaaaaataagtgctgaagatgatttt
tctgtagttaaatattttttcacaggctatcttgatattttaaaagaatcaagagttgat
gagattttctctgaggaagattatccaaatgaatgtatcccatttttaactatacaccaa
tcaaaaggactagaatttcctgttgttatagtattttcattgaattctaagcctaataga
tacgaagatgatgacatatcaagacaaacaagtatcgatagacttatcaattcaagttct
aaactttctgaaaatgataaagaaaaatttgatttttacagaaaattttatgtagcattc
agcagagcaaagaatttattagttttaagttcctatgaaatgggagtatctgaaaatttt
aaacctttcttttactcaattcgtggagttaatagcttgcaatttgatattaatgaagtt
aatttagatgaagtaactaagaaagatgaaagaaagattttatcttatacaactgatata
gcaccatatagacattgtcctatgaagtactatttagtgagggaaaaagaatattcaact
tttagtaaaaagatatttaacttagggataattacacacaaggctatagaacatatcaat
aagttgtttttacagaaaaaaaatccttttttagataatgaatatatagaaaatttacta
aaaaatatctataaatttcaaaatatagatttagatgacaacttagaaagaataatgtct
atagtaaagaagtacattgaagatgaaaagtataacttcgaatacattaaaaaggttgaa
gcttcagaatttagaattgaaaatgactacattctatatgggcagatagatttaatttta
gaagatgaaaatgaaatacagattatagattttaaaacaggtaaatatgatgaatttgag
tattcttctaattacagacaacaattatcattgtataagttgcttcttcaaaaaaaatat
gataaggacatcaaaacttatctatactatttagaagaagatgaacctaaaaaagaaata
cttattacagatgaagaattggaagaagattttaaaaatatcaataaaacaactcaagat
attttagacaataaatttcctaaaattccctataatcataatatttgtggaatttgtgaa
tttaaaaattattgttgggggctagaatga
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