Fervidobacterium pennivorans: Ferpe_0912
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Entry
Ferpe_0912 CDS
T01808
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpe
Fervidobacterium pennivorans
Pathway
fpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ferpe_0912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpe03019
]
Ferpe_0912
03009 Ribosome biogenesis [BR:
fpe03009
]
Ferpe_0912
Enzymes [BR:
fpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ferpe_0912
Messenger RNA biogenesis [BR:
fpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ferpe_0912
Ribosome biogenesis [BR:
fpe03009
]
Prokaryotic type
rRNA helicases
Ferpe_0912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
ERCC3_RAD25_C
UvrD-helicase
Utp25_C
Cas3-like_C_2
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
AFG35023
UniProt:
H9UBY0
LinkDB
All DBs
Position
complement(968635..970281)
Genome browser
AA seq
548 aa
AA seq
DB search
MKNTDITKSVERGSGFEVFGLSKETLSAIEKKGYTQPTEIQKLVLPVALETDKDIIAQAQ
TGTGKTAAFAIPILELVDFKVDKSIKALIVTPTRELALQIYEEIKSLKGNRRIKVATVYG
GQSMERQLKDLARGIDIVVGTPGRLLDHINRKTLDLSNVKYLVLDEADRMLDMGFLDDVL
EIIKQTPETKRTFLFSATMPKEIVSIARKFMKDYEHISTVKEELTTENAEQLYFEIEEDD
KLPLLCRIIDMNPEFYGIVFCQTKAEVDEIARKLSDLGYNADGLHGDYSQSQRERVLDKF
KKKQLNILVTTDVAARGIDIEGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGLAITFVTR
SDYYHFTRVKRFTKAKIAKDKIPMVEDILNRQLENVVNTIKKESYVSNELFRQVAQKLIE
EMGPTEAVEMLLHTLLKEKIDVTRYGNIKLKDFSKQSENNSTVRLFVALGSSKGLDKKRL
VEYISERTGIEPKNINNVRVFETYSFIDVNEADADVIMRTLNKNTGKSGRYSKSSKPLVQ
KAREKKVN
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacacagatattacgaaaagcgttgaaagaggaagtggtttcgaagtttttggc
ttgagtaaggaaacactctcagctattgagaagaaaggttatacacaacctactgaaatt
cagaagttagtacttcccgtagctcttgagactgataaagatataattgctcaagctcag
acaggaacagggaagacagcggcatttgcgataccaatacttgaacttgtcgactttaag
gtagataagagtatcaaagcgttgatagttacacctacaagagagttagcgcttcagata
tacgaggagataaaaagcttgaaagggaatcgtaggattaaagtggccacagtttatggt
ggacaatcgatggaacgacaacttaaagacctagcaagaggtatagatatcgttgttgga
acacctggaagattgcttgaccatataaatcgtaaaacgctcgatttgtccaatgtaaaa
tacttggtattagacgaagctgacaggatgctcgatatgggatttttggacgatgtgctt
gagataattaagcaaacaccggaaacgaaacgtacattccttttttcggcaacgatgcca
aaggaaatagtaagcattgcaagaaaattcatgaaagattacgaacatatctccacggta
aaagaagaactcacaactgaaaatgcagaacaactttacttcgagattgaagaagatgat
aaattaccgcttttgtgtagaataattgatatgaatcctgagttctatggtattgtcttc
tgccagacaaaagccgaagttgatgagattgctaggaaactgtcagacctgggatataac
gcagatggattgcatggtgattattcacaatctcaaagggaacgagtgctcgataaattc
aaaaaaaagcagttgaacatacttgtcactacggacgttgcggcaaggggaatagatata
gaaggtctcactcatgttatcaattactctgttccaagagacccagaatactacgtacac
aggataggtcgaacgggaagggcaggcaaaaagggacttgcaattacattcgtaacaagg
agcgattactaccattttacaagagtaaagagatttacaaaggcaaagatagcgaaagat
aaaatccctatggtcgaagatatacttaataggcaactagaaaatgttgtcaatacaatc
aaaaaagaatcatatgtttccaatgaactcttcagacaagttgctcaaaaactaattgaa
gagatgggacctacagaggcggtcgagatgctgcttcatacgcttctaaaggagaagata
gatgttacccgttatggaaacattaaattgaaggatttttcaaaacaatcagagaataac
tcgactgtgagattatttgtggcactaggttcttctaaaggtttggataaaaagaggctt
gttgaatacatatccgaaagaacgggtattgaaccaaaaaacataaacaatgtgcgagtc
tttgagacgtactcatttatagatgttaacgaggctgatgcagatgttattatgaggact
ctaaataagaacacaggaaagagtggaagatattcgaaatcatccaaaccattggttcag
aaggcacgagaaaagaaggtgaattaa
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