Flavobacterium pectinovorum: Q1W71_00555
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Entry
Q1W71_00555 CDS
T09245
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fpec
Flavobacterium pectinovorum
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fpec03009
]
Q1W71_00555 (rlmD)
Enzymes [BR:
fpec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Q1W71_00555 (rlmD)
Ribosome biogenesis [BR:
fpec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Q1W71_00555 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
FtsJ
PCMT
N6_N4_Mtase
Alginate_lyase2
UPF0020
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
WKL48274
LinkDB
All DBs
Position
complement(122297..123709)
Genome browser
AA seq
470 aa
AA seq
DB search
MGRKNTDKVVFHQIPVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVVDVQTFKKRKAYYEG
KAVKFHELSEHRIEPICDHFGVCGGCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFE
TILGSEKQFFYRNKMEFSFSNARWLTEKEISSTEDLGNRNALGFHIPKMWDKILDIQKCY
LQEDPSNAIRNEIRDFANEHNLAFFNPREQSGLLRTFMIRTASTGEIMVLIQFFENDKKN
RELILDHLYEKFPQITSLQYVVNSKQNDTIYDQDIKLYKGRDYILEEMEGLKFSINAKSF
YQTNSDQAYELYKITRDFAGLTGDETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILD
AKANAERNNITNCEFFVGDMKVVFNEAFIAQHGKPDVIITDPPRDGMHKDVIDQILKIAP
KKVVYVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaaaatacagacaaagttgtctttcatcaaattccggttcttgatgccgga
gcaaaaggagtttcagttgcgaaagctcctgacggaaaagtaatctttattccgaatgtc
gtaccgggagatgtggttgacgtacaaactttcaaaaaaagaaaggcttattacgaaggt
aaagccgtaaaatttcatgaattatcagaacatcgcattgaacctatttgcgatcatttt
ggagtttgtggaggttgtaaatggcaaaacatgaaatacagccaacagttgtattacaaa
caaaatgaagtaaaaaaccacttacaacgtattggaaaagttgaacttcctgaatttgaa
actattttaggttcagaaaaacagtttttctacagaaataaaatggaattttcgttttcc
aacgctcgttggttaaccgaaaaagaaattagtagtacagaagatttaggaaacagaaac
gcactaggatttcatattccgaaaatgtgggataaaatccttgatatccaaaaatgttat
ttgcaggaagatccttcaaatgcgatcagaaacgaaattcgggattttgcaaacgaacat
aatctggcattttttaacccaagagaacaatcaggtttattaagaacttttatgattcgt
actgcttcaacgggagaaatcatggttttgattcagttttttgaaaatgacaagaaaaat
cgtgaacttattctagatcatttatacgagaaatttccgcaaattacttcattgcaatat
gtcgtaaattcgaagcaaaacgatactatttacgatcaggatataaaattatacaaagga
agagattatattttggaagaaatggaaggtttaaaatttagcatcaatgctaaatcattc
taccaaaccaattctgatcaggcttatgaattgtataaaatcacacgcgattttgccgga
cttacaggcgacgaaactgtttatgacttatatacaggaacaggaactattgctcagttc
gtttctaaaaaagctaaaaaagtaattggcgtagaaagtgttccggaagcaattttggat
gctaaagcaaatgcagaacgcaataatattacaaattgcgagttttttgttggtgacatg
aaagtagttttcaatgaagcttttatagcacagcatggaaaacctgacgttattattaca
gatcctccaagagatggaatgcataaagacgttattgatcaaatcttgaaaattgctcct
aaaaaagtagtttacgtaagctgtaactcggctacacaagcacgcgatttagctctaatg
gatgaaaaatacaaagtaacccgtgttcgtccggttgatatgtttccgcaaacgcatcat
gttgaaaatgttgtacttttagaacttcgataa
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