Flavobacterium pectinovorum: Q1W71_01720
Help
Entry
Q1W71_01720 CDS
T09245
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fpec
Flavobacterium pectinovorum
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fpec03016
]
Q1W71_01720
Enzymes [BR:
fpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q1W71_01720
Transfer RNA biogenesis [BR:
fpec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q1W71_01720
Prokaryotic type
tRNA splicing ligases
Q1W71_01720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WKL48503
LinkDB
All DBs
Position
389428..390819
Genome browser
AA seq
463 aa
AA seq
DB search
MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKREKKESILAEAKEVLLHPEKFEGNGTW
GKVAEGLIKPVQVRMHQLKTTRAPFTIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASYFKGKEHQLEAILKDNTKFG
MNETHATKADHDVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLGAGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNAESLNSASHGAGRLFSRAKCKATFTQSEIKKVLKANEV
TLIGGNIDEAPMAYKDITKVMANQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatccggaaaagacctgattaaattaggctttccaaaaaacaattca
ataaacattgcccttgggcaaataaacagatatagaaaaagagaaaaaaaggaatctatt
ttagcagaggcaaaagaagttttacttcatcctgaaaaatttgaaggaaatggaacgtgg
ggaaaagtagctgaaggtttaatcaagccggttcaggttcgaatgcaccagcttaaaaca
acacgtgcaccttttacaatttttggcgaaaatgaaattgatcagcaagctaaatttcaa
ttgtatgattctttaaaactgccaatttcagttgcaggagctttaatgccagatgcacat
tcaggctatggattaccaattggcggagttttagcaacagataatgctgttattccttac
ggagttggagttgatattggctgtagaatgagcttgtcaatttttgatttaccggcttct
tattttaaaggaaaagagcatcaattggaggcaattttaaaagacaataccaagtttgga
atgaacgaaacacatgctacaaaagctgatcatgatgttttttataaaagtgaatttcag
gatattccgttgttaaaaaatcttttaccaaaagcgtataagcaattaggaagttctggc
ggagggaatcattttgtagaatttggaattgcaaaaattgacaatccggaaaacgaatgg
aagttaggagctggtgaatatttcgccgttctttcgcatagcggatcgcgtggtttaggt
gctaatatagcgaaacattacacatatttggcaacgaaacaatgtccgttaccaaaaaat
gtacagcatttggcctggctagatttaaatacgcatgacggtcaggaatattggttggcg
atgaatttagcgggagaatatgccaaagcctgtcacgatgatattcacagaaggattgcc
aaagcaatagggaagagggtagttgttacaatagaaaaccaccacaattttgcatggaaa
gaaatggtaaatggacaagaatgcattgtgcacagaaaaggggcaactccagctgctgaa
ggacaattgggaattattccgggatcgatgacagcgcccggttatattgtaaaaggaaaa
ggaaatgcagaaagtttaaattcagcctcgcacggtgcaggtcgtttattttcaagagct
aaatgtaaagctacttttactcaaagtgaaatcaaaaaagttttgaaagctaatgaggtc
actttaattggaggaaatatcgatgaagctccgatggcatacaaagacattacaaaagta
atggctaatcaaacggatttagttgaagttctgggaacttttacgcctaaaatcgttaga
atggaccgctaa
DBGET
integrated database retrieval system
