Flavobacterium pectinovorum: Q1W71_08860
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Entry
Q1W71_08860 CDS
T09245
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q1W71_08860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpec03019
]
Q1W71_08860
Enzymes [BR:
fpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q1W71_08860
Messenger RNA biogenesis [BR:
fpec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q1W71_08860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WKL49879
LinkDB
All DBs
Position
2133015..2134265
Genome browser
AA seq
416 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYAKYTNLTQLTIFGGVSQNPQVD
TLKKGVDILVATPGRLLDLQKQGFLDLDHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLQDPAKVEVSPVSSTAENVEQRVYFVEKTEKRNLLYHLI
KNENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDEHPYWKDI
QKLIKVDVKTITDHPYQWHAGSPEATAEKPKNSNRSGGAHKSRKSNASKQNKKRWY
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgaagatttatcactttccaaaagtatacaaaaagccgtatttgaagaaggc
tatttaaaccccacacctattcaggagcaatctattccgatcgttttggcaggaagagac
cttattggctgtgcacaaacaggaacaggaaaaacagcagcatttgctattccaatcata
catcaattacaccgaattgtaggttcatcaaaaaaagccaaacaaattcgcgcccttata
gttacgccaacccgtgaattagcggttcagattggacaaagttttgacacttatgccaaa
tataccaacctgacgcaattaaccatttttggcggagtttctcaaaatccgcaagttgat
actttgaaaaaaggtgttgatattttggttgccaccccgggaagattactggatttacaa
aaacaaggttttcttgatcttgatcatttgcatactttagttttggatgaagccgatcaa
atgcttgatatgggttttattaatgatgtaaaaaagattgtaaaactaacgcctaaaaat
cgtcagactttattattctcggctacaatgcctatcgcaattagagaattggccgaaatg
tttttgcaggatcctgcaaaagtagaagtttcgcctgtttcatcaactgcagaaaatgta
gagcagcgtgtgtattttgttgaaaaaacagagaaaagaaatttactttatcatttaata
aaaaacgaaaacttatcgaatgttttggttttttcgagaaccaaacacggagctgataat
gttgtaaaagcattgcgtaaaaaagatatcccggccgaagcaattcacggcgataaatct
caaaatgcaagacaacgtgttttagacgcttttaaaaataaagaagttggtgttcttgtt
gctacagatatcgccgcaagaggaattgatattgatcaattgccttttgtaattaatttt
gatttgccgaatattcctgaaacttacgtacaccgaattggtagaacgggacgtgcagga
aatggcggaatcgcaatttcattttgcagtaaagatgaacatccttattggaaagatatt
cagaaattgataaaagttgatgtaaaaacaattacagatcatccttatcaatggcatgca
ggaagtcctgaagcaactgctgagaaacctaaaaactcaaaccgcagtggtggcgctcat
aaatcgagaaagtcaaacgcatccaaacaaaacaaaaagcgctggtattag
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