Flavobacterium pectinovorum: Q1W71_12655
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Entry
Q1W71_12655 CDS
T09245
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q1W71_12655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpec03019
]
Q1W71_12655
03400 DNA repair and recombination proteins [BR:
fpec03400
]
Q1W71_12655
Enzymes [BR:
fpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q1W71_12655
Messenger RNA biogenesis [BR:
fpec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q1W71_12655
DNA repair and recombination proteins [BR:
fpec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q1W71_12655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
NirdL-like_HTH
DUF3013
DUF1949
Motif
Other DBs
NCBI-ProteinID:
WKL45809
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All DBs
Position
3076437..3078332
Genome browser
AA seq
631 aa
AA seq
DB search
MPEAQEILLKYWKHDSFRPLQKEIIDSVLEGQDTFALLPTGGGKSICFQVPAMMQDGICL
VISPLIALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQYGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKYFPKIPFLALTATATPRVI
EDINTELGLKAPKLFQQSFERKNIAYMIFEVEDKLYRTEQILKKNPQPSIIYVRNRKSCL
SISSQLQSLGFNATYYHGGLSAKEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENIENYYQESGRAGRNGEKAFSVLLYNNSDANQTEQQFLSVLPDKKFLKTMYVKLC
NYFQIAYGEGLDDTFSFKLNHFCHKYEFPTLKTYNALQFLNQQGIITLSQEFSEKITLQF
LIESKEVIRYTSLNQNDEEIILAILRTYPGVYEMKTPFNLSLIAKKSNHTEEQVLAVLEK
LREKEIIEYKSKNNDATILFNEVREDDLTINRVSKYLEKQNQLKREQLLSVLHYIKENKT
CKNRLILDYFGEETKENCGVCSYCITQKGKITEADSIADKILYLLKSAALTSREIQTQIK
MDANDIILVLQELLENNHITIQPNNKYTLKS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagcacaggaaattcttttaaaatactggaaacacgacagttttagaccgttg
caaaaggaaattattgactcggttttagaaggtcaggatacttttgccttactcccgaca
ggtggtggaaaatcgatttgttttcaggttccggctatgatgcaggacggaatttgtttg
gtgatttcacctttgatcgctcttatgaaagatcaggtggcgaatttgcaaaaaagggaa
attaaagccattgcgctgacaggcggaattcacacggaagaaatcattgatcttctcgac
aattgtcaatacggaaattataagtttttatatctttctcctgaaagacttcagtctgat
tggattttggaacgtattaaaaatcttcctataaatttaattgctattgatgaagcgcat
tgtgtttcgcaatggggacacgattttcgtccggcttatctgaaaatttctgagcttaaa
aaatattttcctaagattccttttctagcattgacagcaacagcaactccaagagttatt
gaagatatcaatacagaattaggtttaaaagccccaaaactttttcagcaatcatttgaa
agaaaaaacattgcttatatgatttttgaggtcgaagacaaattgtatcgtaccgaacaa
attttgaagaaaaacccacagccttctattatatatgtacgaaatcgaaaatcatgtttg
agtatttcatcacaactgcaatcgttaggattcaacgcaacttattatcacggtggactt
tcggcaaaagaaaaagataaaaacatgcagttgtggatgtcggaacaggcgcaggttatc
gtagccacgaatgcgtttggaatgggaattgacaaagacaacgtaaaaacggttattcat
acacaacttcctgaaaatatagaaaattattatcaggaatccggaagagcgggacgaaat
ggcgaaaaagctttttcagttttgctttataacaattcagatgcaaatcaaaccgaacag
caatttttaagtgttttgccggataagaagtttttaaaaacaatgtatgtcaaactttgc
aactattttcagattgcctatggtgaaggtttagatgatactttttcatttaaactaaat
catttttgtcataaatatgagtttcccactttaaaaacttataatgcattgcagttttta
aatcaacagggaatcattacactatcgcaggaattttcagaaaaaattacactacagttt
ttaatcgaatcaaaagaagtaattcggtatacgagtctgaatcaaaatgatgaggaaatt
attctggcgattttaagaacgtatcccggagtttatgaaatgaaaactccttttaatctt
tctttaatagcaaaaaaatcaaatcatacagaagagcaggttttggctgttttagaaaaa
cttagagagaaagaaatcattgaatacaaatcgaaaaacaacgacgctactatactattt
aatgaagttcgcgaagatgatcttacaataaacagggtttcgaaatatctggaaaaacaa
aatcagttaaaaagggaacagcttttatctgttctacattatataaaggagaataaaacc
tgcaagaaccgtttgattttggattactttggagaagaaacaaaagaaaactgtggcgtt
tgctcttactgtattactcaaaaaggaaaaatcaccgaagctgattcgattgcagataaa
attctgtatttattaaaatcggctgctttgacttcgagagaaattcagacacaaataaaa
atggatgccaatgatattattttggtgcttcaggaattattagaaaacaatcatattacc
attcaacccaataataaatacactttaaaatcataa
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