Flavobacterium pectinovorum: Q1W71_15295
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Entry
Q1W71_15295 CDS
T09245
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec02020
Two-component system
fpec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q1W71_15295 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q1W71_15295 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpec03021
]
Q1W71_15295 (rpoN)
Transcription machinery [BR:
fpec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q1W71_15295 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
WKL46318
LinkDB
All DBs
Position
3664924..3666384
Genome browser
AA seq
486 aa
AA seq
DB search
MLKQFLNLKLSQKLSPQQIQLMKLIQLPTQAFEQRLLEEMNENPALEAGKEDEYEADEFA
NEDYDDYDDAESDRIEADDINIDEYLSDDDTPDYKTQVNNYSEDEERETPFASPISFHQD
LINQLNTFILNDEEREIAEFLVGSIDDMGYIRRSVSDMVDDMAFTQGIYTDEVMVEKMLH
VIHELEPSGVGARDLQECLLLQLKHKTPTEYVDLAIDIIENQFDAFTKKHYDKLLQKYGV
SNEQLKKAILEIERLNPKPGGSFTGNNKVTENVVPDFAIRIVDGELELTLNGRNAPSLHV
SKDYQEMMQTYKDSRDKSSAQKDAVQFIKQKLDSAKWFIDAIRQRQETLFVTMNAIMHYQ
EEFFLDGDETKLKPMILKDIADMVGLDISTISRVANSKYVETPYGTKLIKEFFSEAMKND
QGEDVSTLEIKKILKNTIEEEDKKKPLPDDQLAEILKEKGYPIARRTIAKYREQLDIPVA
RMRKKI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaatttttaaatttaaaattatcacaaaaattatctccacagcaaattcag
ctgatgaagttaattcaattgcctacgcaagcttttgagcaacgtttattagaagaaatg
aacgaaaatccggctctggaagctggaaaagaagatgaatacgaagcagatgaattcgca
aatgaagactacgacgattatgatgatgccgaatctgacagaattgaagcagacgacatt
aacatagacgaatatctaagtgacgatgatactccggattataaaacccaggttaacaat
tatagtgaagacgaagaacgcgaaacgccttttgcttcgcctattagttttcatcaggac
ttaatcaatcagttgaatacttttatattgaatgatgaagagcgtgaaatcgctgaattt
cttgttggaagtatcgatgatatgggttacatccgcagaagcgtttctgacatggttgat
gacatggcttttacccaaggtatttataccgatgaagttatggtcgaaaaaatgctgcat
gttattcatgaactcgagccttcgggcgttggagcacgcgatttgcaggagtgtttatta
ttgcagttaaagcataaaacaccaaccgaatatgttgatttagcaattgatattatcgaa
aatcagtttgatgcttttaccaaaaaacactacgataaattattgcagaaatacggcgtt
tcaaacgaacagctgaaaaaagccattctcgaaatcgaaagactaaacccaaaaccgggt
ggatcttttaccggaaataataaagttaccgagaatgtggtaccggatttcgctatcaga
attgttgacggcgaactggaattaactttaaacggacgaaatgctccttccctgcacgtt
tctaaagattatcaggaaatgatgcagacgtacaaagactctcgtgataaatcatcggct
caaaaagatgcagttcagtttatcaaacaaaaactcgattcggcaaaatggtttatcgac
gcgattagacaacgccaggaaacactttttgtgacgatgaatgcgattatgcattatcag
gaagaatttttcttagacggcgacgaaaccaaactaaaaccaatgatcttaaaagacatt
gccgatatggttggtttggatatttcgacgatttcgcgtgttgctaacagcaaatatgtt
gaaacaccctacggaacaaagcttattaaggaatttttctctgaagcgatgaaaaacgat
cagggtgaagatgtttcgactttagaaatcaaaaagattctaaaaaatacaattgaggaa
gaagataaaaagaaacctttaccagacgatcaattggcagaaatcttaaaagaaaaagga
tatccaattgcgagaagaactattgcgaaataccgcgaacagcttgatattcccgtagcg
agaatgagaaagaagatttag
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