Flavobacterium pectinovorum: Q1W71_17315
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Entry
Q1W71_17315 CDS
T09245
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q1W71_17315 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpec03019
]
Q1W71_17315 (rnr)
03016 Transfer RNA biogenesis [BR:
fpec03016
]
Q1W71_17315 (rnr)
Enzymes [BR:
fpec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q1W71_17315 (rnr)
Messenger RNA biogenesis [BR:
fpec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q1W71_17315 (rnr)
Transfer RNA biogenesis [BR:
fpec03016
]
Prokaryotic type
tRNA degradation factors
Q1W71_17315 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
DUF7430
HTH_11
DUF5604
Motif
Other DBs
NCBI-ProteinID:
WKL46714
LinkDB
All DBs
Position
complement(4170887..4173067)
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKIRKPIKNEKDFSSKIVKILSQSPNKAFNYKQIGAKLELDDTKSRNQIIKDLKILAA
SKKIIETEPGKYLVKVESQDYYEGTIDMTSRKTAYFICPDFTEDVFIPTNNLNRALDKDK
VKVYVYNRRKGKRPEGEVIEVIERNKTEFVGVIDIQANFAFVSTANPKMYTDIFIPKDKI
GEAENGDVVLVTIEDWPKRADSPFGSVIRVLGKPGEHNTEIHAILAEYGLPADFPVEVEV
YAQKIDTSIQESEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVS
YYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAIFEVSENA
QVINQWFGRTVIYSDQRFAYEEAQYIIETKDSTIPVDVSIKGESYTVSDEITNATLKLDE
LAKILRKKRMANGAISFDKVEVKFNLDAEGEPEGVYFKVSKDANHLIEEFMLLANRKVAE
YIGKQKKTFVYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDISKSLNALMEEVNGKKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDNGAS
VDDEVYETKCLHCSNMESLATNAERDSIKYMQVKYMQDHQDEEFLGVISGVTEWGIYVEI
VSNKCEGMVRIREIKDDYYTFDEKQYALVGATSNSILQLGDEIYVKVKNADLVKKQLDFH
FLRRAE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaattagaaagccgataaaaaatgagaaagatttctcaagcaaaatagta
aaaattttatcgcaaagcccaaataaggcattcaattataaacagataggagcaaagtta
gaacttgatgatacaaaaagcagaaatcagattataaaagatttaaagattctggctgct
tcaaagaaaataatagagactgaacctggtaaatatttagtaaaagtcgaaagccaggat
tattacgaaggaacaattgatatgaccagtagaaaaacggcatattttatttgtcctgat
tttaccgaagatgtttttattccgaccaataatttgaatcgtgcattagataaagacaaa
gtaaaagtttacgtttataacagaagaaaaggaaaaagacctgaaggcgaagtaattgaa
gttatagaaagaaacaaaactgaatttgttggagtaattgatattcaggcaaattttgca
tttgtgtctactgcaaatcctaaaatgtatacggatatttttattccgaaagataaaatt
ggagaagcagaaaatggtgatgttgttttagttacaatcgaagattggccaaaaagagct
gatagtccgtttggatctgtaatcagggttttaggaaaaccaggagaacataatacagag
attcacgcgattttggctgaatatggtttacctgcagattttccggtagaagtagaggtg
tatgctcaaaaaatagatacttcgattcaggaatctgaaattgcaaaacgtcgtgatatg
cgtgatacgcttacgtttacgatagatccaaaagatgcaaaagattttgatgatgccttg
tctttcaaaaagttagaaaatggaaactacgaaattggtattcatattgccgatgtctct
tattatttagaagaaggaacaattctggatgatgaagcatatcaaagagcaacttcagtt
tatttagtcgatagagtagtgccaatgcttcctgaagttttatctaattttgcttgttcg
ctgcgtccaaatgaagagaaatatacattctctgccatatttgaagtttcagaaaatgct
caggttattaaccaatggtttggaagaactgtaatttattctgatcagcgttttgcttat
gaagaagcgcaatatatcattgaaacaaaagatagtacgattccggttgatgtttctatt
aaaggagaatcttatacagtttcggatgaaataacaaatgcaactttaaaattagatgaa
ttagcaaagattttaagaaagaaaagaatggccaatggtgctatttcttttgataaagtt
gaagttaaatttaatctagatgcagaaggagaaccagaaggagtttactttaaagtttct
aaagatgccaatcatttaattgaagaattcatgcttttagccaatagaaaagtagctgaa
tacattggaaaacaaaagaaaacatttgtttacagaattcacgatgaaccaaacgaagac
aaattaattgcgatgcaaaccgtaattgctaaatttggttataaaattgatttccgtaac
aaaggtgatatttcgaagtctttgaatgcattgatggaagaagtaaatggtaaaaaagaa
caaaacttaattgatactcttgcaattagaagtatgagtaaagccaaatattcaacagat
aatattggccattatggtttagcttttgattattacagtcattttacttcgccaattcgt
cgttatccagacgttatggtacatcgtttgctacaatattatctggataatggagcttct
gtagatgatgaagtttatgaaacaaaatgtttgcattgttctaatatggaaagtttagca
actaatgctgaacgtgatagtattaaatacatgcaggttaaatacatgcaggatcaccag
gacgaagaatttttgggagttatttcaggagttacagaatggggaatttatgtagaaatt
gtttctaacaaatgtgaaggaatggtaagaatcagagaaattaaagatgattattatact
ttcgatgaaaagcaatatgctttagttggggcaacttcaaatagtatattacaattggga
gatgaaatttatgttaaagtaaaaaatgcagatttggttaaaaaacaactggatttccat
tttttaagaagagcagaatag
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