Flavobacterium pectinovorum: Q1W71_18815
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Entry
Q1W71_18815 CDS
T09245
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03030
DNA replication
fpec03430
Mismatch repair
fpec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q1W71_18815 (dnaE)
03430 Mismatch repair
Q1W71_18815 (dnaE)
03440 Homologous recombination
Q1W71_18815 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpec03032
]
Q1W71_18815 (dnaE)
03400 DNA repair and recombination proteins [BR:
fpec03400
]
Q1W71_18815 (dnaE)
Enzymes [BR:
fpec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q1W71_18815 (dnaE)
DNA replication proteins [BR:
fpec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q1W71_18815 (dnaE)
DNA repair and recombination proteins [BR:
fpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q1W71_18815 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
OB_MCM10
Motif
Other DBs
NCBI-ProteinID:
WKL47004
LinkDB
All DBs
Position
4512396..4516940
Genome browser
AA seq
1514 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPDGFNIPY
DAERIHGISTELAEADGITLVEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVDS
PMSTMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDKPFAEAHNATADVEATT
RCFLELIRREVFTKEELDVPKEYFKDFQERNPQEFPLIGLKHINLKAASDKIREQIKALQ
VDEVQTTVSDSDRADFKAAKYAHLHNHTQFSVLQSTIGIGNIVAATAKNKMPAVAMTDTG
NMMGAFHFVSAVMNHNKAASGKNKALVEAGEEPTETEIKPIVGCEFNVCDNHLDKSKKDN
GNQVVLLAKNKNGYHNLAKMSSIAFTDGFYYVPRIDRKIVEKYKEDIMVLSGNLYGEIPS
KILNIGENQAEEALIWWKEQFGDDFYLEVMRHNQEDENRVNKTLIDFAQKHNVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYYKSEEEMKKLFADLPE
AIINIQEIVDKVEGYSLYRDVLLPKFDIPEEFVVVEDEADGGVRGENKYLRHLTMVGAKK
RYGEITESIQERLDFELLTISNSGYPGYFLIVQDFIAEARNMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGKNQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPAMMPSKWNLARFISENEEDVKKALRSDE
FDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDTFPIDDVETYA
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEE
IKYDLDACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAAKKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGA
VETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAMRYGSKFQENENSSQVSLFGETSEVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YLSGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLTFAGIIHNVQHRVAKNGKGWAVFN
LEGYDESFEFKIFGEEYLKFRHFLIQNNFAFLKILIKDGWVNHDTGKKSEPRMQFVEIRQ
LQDILEAFAKKLVVLLNIKDLQTEFIHKLSHLFNDNKGDNSVTFEIMELEKIKRLVEVET
TNEFEETEDAVFVDESENDDNEVALSETKMQEVKEVEEIKVVTKLTMPSRRLKIRISTEL
LQELEKMQVNFKLN
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatattcgataccgaaacaaccggattaccaaaacgctgggatgctcccatt
accgattctgataactggcctcgctgtattcagatcgcctggcaactgcatgacgaaatg
ggacagcttatcgaacatcaggattatttggtaaaacctgacggatttaatattccgtat
gatgccgaacgtattcacggaatttcaactgaattggctgaagccgatggaatcacgttg
gtcgaagttttggagaaattcaatatcgctttaagcaaaaccaaatttatcgttggtcag
aatttaggtttcgacgttaatattatgggagccgaattccatagaatgggtgttgattct
ccaatgagtacaatgccggtattagatacttgtaccgaagttacagcttcgttattacaa
cttcccggaggtcgtggaggaaaatttaaactgccaaccttaacagaattacatagttat
ctttttgataaaccttttgcagaagcgcacaacgcaactgccgacgttgaggcaacgacg
cgttgtttcttagagttaattagaagagaagtttttaccaaagaagaactggatgttcca
aaagaatattttaaggactttcaagagagaaatccacaggaatttccgttaattggatta
aaacacatcaatttaaaagcagcttctgataaaattagagagcaaataaaagctttacaa
gttgatgaggtacaaactacggtttcagactctgacagagccgattttaaagctgcaaaa
tacgcgcatttacacaaccatacccagttttcggttcttcaatcgactataggtattgga
aatattgttgcggctacagccaaaaacaaaatgccggcagtagctatgacagataccgga
aacatgatgggagctttccattttgtaagtgctgtaatgaatcacaacaaagcagcttcg
ggtaaaaacaaggccctggttgaagccggagaagaaccaacagagaccgaaataaaacca
attgtaggctgcgaatttaatgtttgtgataatcacttagataaaagcaaaaaagacaac
gggaatcaggttgtattattagccaaaaacaaaaacggttatcacaatctggctaaaatg
tcatcaattgcttttacagacggattttattatgttccgagaattgatcgtaaaatcgtc
gaaaaatacaaggaagacatcatggttttgtccgggaatttatatggagagattccgagt
aaaattctgaacatcggtgaaaaccaggccgaagaagctttgatttggtggaaagaacaa
tttggagatgatttttatctcgaagttatgcgccacaatcaggaagatgaaaatcgtgta
aataaaaccctgattgattttgctcagaaacacaatgtcaaattaattgcgacaaataat
acttattatttaaataaagaagatgccaatgcacacgatattttattgtgtgtaaaagac
ggtgaaaaacaagcaacgccaattggccgtggccgtggttaccgctacggattaccgaat
caggaatattattataagtcggaagaagagatgaaaaaactctttgccgatttgccggaa
gccattatcaacattcaggagattgtagataaggttgagggttattcactttatcgtgat
gtattgcttccaaaatttgacattccggaagaatttgttgttgtcgaagatgaagctgac
ggaggtgttcgaggtgaaaataaatacctgcgacacctaacaatggtgggtgccaaaaaa
cgatatggcgaaatcacggaatctattcaggaacgtctggattttgagttgttaacgatt
tcaaattcaggatatccgggatactttctgatcgttcaggattttattgctgaggccaga
aatatggacgtttcggtagggccgggacgtggatctgcagcgggatctgctgttgcttac
tgcttaggaattacaaacattgacccaatcaagtacgatttgctttttgagcgtttcctg
aatccggatcgtgtatcgatgcccgatattgatatcgattttgatgatgaaggtcgtggt
cgtgttatggattacgttatcaataaatacggaaaaaatcaggttgcgcaaattattacg
tatggtaaaatggcaaccaaatctgcgattcgtgatacggcgcgtgtattggatttaccc
ttatttgaagccgatagaattgcaaaactgattccggcaatgatgccttcaaaatggaat
ttggcgcgttttatttctgaaaacgaagaggatgttaaaaaagcccttcgatctgatgaa
tttgataacgtaaaagaattaatcgctattgccaatgaagacgatttggccggagaaaca
attcaacaggcaaaaatcctggagggatccatgcgaaacacgggaattcacgcctgtggt
gtaattattacgccatcggatattacgaatttcgttcccgtaaccacagcaaaagattct
gatttatatgtaacacagtttgataactcggttgcagaaagtgcaggattgctaaaaatg
gacttcctgggtttgaagacccttaccttaataaaagataccgtaaaactggtaaaatac
agaaccggaattgatctggatccggatacttttccgattgatgatgtggagacttatgcg
cttttccaaagaggagaaacagttggaatcttccaatacgagtcgcccggaatgcagaaa
tatatgaaagatctgaagccaacggtttttggagatttaattgccatgaatgccttgtat
cgtccaggacctttggagtatattccatctttcgttcgaagaaaaaatggcgaagaagaa
atcaaatacgatttagatgcctgtgaggaatatttaggtgaaacatacggaattacggtt
tatcaggagcaggtaatgcttttgtcgcaatcgctggcagactttacaaaaggtgaggcc
gacgttttgcgtaaagcgatgggtaagaaacaaaaagatgtacttgataaaatgaaacct
aagtttgtcgagcaagcggcaaaaaaaggtcatgatgcaaaaattctggagaaaatctgg
aaagactgggaagcttttgcgagttacgccttcaacaaatcacactcaacttgttatgcc
tggattgcttatcaaacggcatatttaaaagcacattatcctgcagaatatatggcagcg
gttctttcgaataatatgaatgatattaaacaagtatcgttttttatggaagaatgtaaa
cgtatgggcttgcaggtattaggtccagatgtaaatgagtcgtattacaaatttactgta
aacgatgattatgctgttcgttttggaatgggggcaattaaaggtgttggttccggagca
gttgaaactattgtagaaaacagaaaagacggaagatataaatcgatttttgatttggcg
aagcgaatagatttgcgtgctgctaacaaaaaagcaattgaaaatctggctcttgccgga
ggttttgattcgtttgaaggaacgaccagagcacaatattttcatgatgatggcgacgga
attacgttttatgaaaaagcgatgcgttacggatcgaagtttcaggaaaacgaaaattca
tcgcaggtaagtttgtttggagaaaccagtgaagtgcaaattgcagaaccggttgtgcct
ccttgtgaagactggagtacgatggaaaaactggcaaaagaaaaagaggtagttggaatt
tatctttccggacatccgcttgatgattttagatttgaaatgaaatacttctgcaatgca
cgattggaagcattgaagagtatgaacgaatatgtgggtaaaaacctgacttttgcaggc
atcattcataacgtacaacatcgtgtagcaaagaacggaaaaggctgggcagtatttaat
ttagaaggatatgatgaaagttttgagtttaagatttttggtgaagaatatttaaagttc
cgtcacttcctgattcagaacaattttgcattcctgaaaatattgattaaagacggatgg
gtaaatcacgatacaggtaaaaaatcagagccaagaatgcagtttgttgaaattagacag
ctgcaggacatacttgaagcctttgctaagaaattagttgtattgttgaatataaaagat
cttcaaacagaatttatccataaactaagccatttatttaatgataataaaggagataat
tcagtgacttttgaaatcatggaattagaaaaaattaagcgtttagttgaggtagaaacg
actaatgagtttgaagaaacagaagatgccgtttttgttgatgaaagtgaaaatgatgat
aacgaagtagcattaagcgaaactaaaatgcaggaagtaaaagaagtagaggaaataaag
gttgtaaccaaattaacgatgccgagccgacgattaaagatcaggatttcgacagagtta
ttgcaggaattagaaaaaatgcaggtaaattttaagctgaattaa
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integrated database retrieval system
