Fusobacterium periodonticum: C4N17_09480
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Entry
C4N17_09480 CDS
T06291
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpei
Fusobacterium periodonticum
Pathway
fpei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4N17_09480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpei03021
]
C4N17_09480 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpei03400
]
C4N17_09480 (rpoC)
Enzymes [BR:
fpei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4N17_09480 (rpoC)
Transcription machinery [BR:
fpei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4N17_09480 (rpoC)
DNA repair and recombination proteins [BR:
fpei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4N17_09480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AVQ25859
UniProt:
A0AAD0HVT7
LinkDB
All DBs
Position
complement(1901150..1905112)
Genome browser
AA seq
1320 aa
AA seq
DB search
MGIRSFDKIRIKLASPEKILEWSHGEVTKPETINYRTLNPEKDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESILYFARYIVTSSEEDSIKVGKILTEKEYKLLKQTYPNKFEAYMGADGILKLLTA
IDLEALRDELENELIDVNSAQKRKKLVKRLKIVRDFISSGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKDRDGEKGEGKFFSNLDQVITAYQNDKVGTHAKIKVR
INGKLVDTTPGRVLFNEILPEVDRDYSKTYGKKQIKALIKSLYEAHGFTETAELINRVKN
FGYHYGTFAGVSVGVEDLVIPPQKKDLLKQADDEVAQIEKDYKSGKIINEERYRKTIEVW
SRTTQAVTDAMMDNLDEFNPVYMMATSGARGNTNQMRQLAGMRGNMADTQGRTIEAPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVDAAGKVIEELKERINGRVLAEDLVHNGKTIAKRNTMIHKDLLKKIEDLGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIEINGEEVVVSQGGKIIIADNEHEVDSGSVIKVKEGQ
HVKEGDILVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSTDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKAILSEIDGRIEILPAKKKQMRVINVRSLTNPDDFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDILNIKGLVAAEQFILESVQQVYREQDVTVNDKHIEIIVKQMFRK
VRIVDSGASLYLEDEVIEKRIVDLENKKLAEEGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKAIKVKYSSDEEKSEEE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgataaaattagaataaaattagcctctcctgaaaaaatatta
gaatggtctcatggagaagtaacaaaacctgagactatcaattatagaactttgaatcca
gaaaaagatggattgttttgtgaagtaatatttgggccaacaaaggattgggaatgctct
tgtggaaaatataagagaatgagatataaaggcctagtttgtgaaaaatgtggagtagaa
gtaacaagagctaaggttagaagagaaagaatgggacatataactctagcttctcctgta
tctcatatttggtattctaaaggaagtccaaataagatgtctttaattattggtatttct
tctaaagaattagaatcaattttatattttgcaagatatatagtaacttcaagtgaagaa
gattctataaaagttggaaaaatattaactgaaaaagaatataaattattaaagcaaaca
tacccaaataagtttgaagcttatatgggagctgatggaattttaaaacttttaacagct
attgatttagaagctttaagagatgagctagaaaatgaattaatagatgtaaattctgct
caaaagagaaagaaattagtaaagagattaaaaatagttagagatttcatttcatcagga
aatagacctgaatggatgatacttacaaatgttccagtaattccagctgaactaagacca
atggttcaacttgatggaggaagatttgcaacatctgacttaaacgatctatacagaaga
gtaataaacagaaataacagacttaaaaaattattagaaataaaagctccagaaattgtt
gtaaagaatgaaaaaagaatgttacaagaagctgtggacgctcttatagataatggtaga
agaggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aaaggaaaacaaggaagatttagacaaaacttactaggaaaaagagttgactactcagcg
agatcggttatcgttgttggtccatctttaaaaatgaaccaatgtggtatacctaagaaa
atggctcttgaattatataaaccatttataatgagagagttagtaagaagagaattagct
aacaatataaaaatggctaaaaaattagttgaagaatctgatgataaagtatgggcagta
atagaagatgttatagcagatcaccctgttctactaaacagagcccctacactacacaga
ttatcaatacaagctttccaacctgtattgatagaaggtaaagctataagattacaccct
ctagtttgttcagcattcaacgctgacttcgacggagaccaaatggctgtacacttaact
ttatctcctgaatcaatgatggaagcaaaacttttaatgtttgctcctaataatatcatt
tcaccatcaagtggagaacctatagctgttccttcacaagatatggttatgggatgtttc
tatatgactaaagatagagatggagaaaaaggagaaggaaaattcttctcaaatcttgat
caagttataacagcataccaaaatgataaagtaggaactcatgctaagataaaggttaga
attaatggaaaattagttgatacaactccaggaagagttttattcaatgaaattttacct
gaagtagacagagactacagtaaaacttatggtaaaaaacaaataaaagccttaataaaa
tctttatatgaagcacatggatttacagaaacagctgaacttataaacagagttaaaaac
tttggatatcactatggtacttttgctggagtttcagttggagttgaagacttagtaatt
ccaccacaaaagaaagatttactaaagcaagcagatgatgaagttgctcaaatagaaaaa
gattataagtctggaaaaattataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaactactcaagctgttactgatgcaatgatggataacttggatgaattcaaccca
gtttacatgatggcgacttcaggagccagaggtaatactaaccaaatgagacagttagca
ggaatgcgtggaaacatggcagatacacaaggtagaacaatagaagctcctatcaaagct
aactttagagaaggactaacagtattggaattctttatgtcttcacacggagcgagaaaa
ggacttgccgatacagctctaagaaccgccgattcaggatacttaacaagaagacttgtt
gatatttctcatgaagttatagttaatgaagaagattgccatactcatgaaggaatagaa
gttgaagcactagtagatgctgctggtaaagtaatagaagaattaaaagaaagaataaat
ggtagagttttagcagaagatctagttcataatggaaagacaattgctaaaagaaacact
atgattcataaagacttacttaaaaagatagaagatttaggaattaaaaaagtaaaaatc
agatctcctttaacttgtgctttagaaaaaggagtttgtcaaaaatgttatggtatggac
ttatcaaactacaatgaaatcttactaggagaagctgttggagtggttgctgctcaatca
ataggagaacctggtactcagcttacaatgagaaccttccatacaggaggggttgcagga
gctgcaacagttgtaaattctaaaaaggctgaaaatgatggagaagtttcattcagagat
atcaaaactattgagatcaatggtgaagaagtagtagtaagccaagggggaaaaattata
attgctgacaacgaacatgaagttgactcaggttcagtaataaaagttaaagaaggacaa
catgtaaaagaaggagatatccttgttacatttgacccttaccatatccctataatttca
tctcatgatggtaaagttcaatatagacactttactcctaaaaatataagagatgaaaag
tatgacgtacatgaatatctagttgtaagatcagttgatagcactgactctgaaccaaga
gtacatatacttgataagaaaaatgaaaaattagctacttataatataccttatggagca
tacatgatggtaagagatggagccaaagttaaaaaaggtgacatcatagccaagattatc
aaattaggagaaggtactaaagacattactggaggtctaccaagagtacaagaactattt
gaagccagaaatccaaaaggtaaggctatactttctgaaatagatggaagaatagaaata
ttaccagctaagaagaaacaaatgcgtgttattaacgttagatctttaacaaatcctgat
gatttcaaagaatatttaattccaatgggagaacgtttagttgttactgacggattaaag
ataaaagcaggagataagattacagaaggagctatttctccttatgacatattgaacatc
aaaggactagttgctgcggaacaatttatactagaatctgtgcaacaagtttatagagaa
caagatgttacagttaatgataaacacatagaaattattgttaaacaaatgtttagaaaa
gttagaatagttgattcaggagcttctctatatcttgaagatgaagttattgaaaagaga
atagtagatcttgaaaataaaaaattggctgaagaaggaaaagcacttattaaatatgag
ccagttatacaaggtattacaaaagccgctgtaaatactggaagctttatatctgctgct
tcattccaagaaacaacaaaagttctatctaatgctgcaattgaaggaaaagttgactac
ctagaaggattaaaagaaaacgtaatcttaggtaagaaaattccagcaggaacaggattt
aacaaatacaaagctataaaagtaaaatatagcagtgatgaagaaaaatcagaagaggaa
taa
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integrated database retrieval system
