Fusobacterium periodonticum: C4N17_11015
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Entry
C4N17_11015 CDS
T06291
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpei
Fusobacterium periodonticum
Pathway
fpei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N17_11015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpei03019
]
C4N17_11015
03009 Ribosome biogenesis [BR:
fpei03009
]
C4N17_11015
Enzymes [BR:
fpei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4N17_11015
Messenger RNA biogenesis [BR:
fpei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4N17_11015
Ribosome biogenesis [BR:
fpei03009
]
Prokaryotic type
rRNA helicases
C4N17_11015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NDK
DeaD_dimer
AAA_22
Cas3-like_C_2
2H-SAK
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVQ26114
UniProt:
A0AAD0HWC8
LinkDB
All DBs
Position
2191414..2193003
Genome browser
AA seq
529 aa
AA seq
DB search
MEQLEKLKEFRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKT
AAFSLPIIENFETSDHHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ
RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTN
DDKRMLFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR
IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI
LVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL
QIQKAVKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAEN
IVASLLKLTYSDVLDESNYNEISPVKMEDTGKTRLFIAMGRKDGMTPKKLVDFIVKKAKV
KQAYIKNAEVYDAFSFVSVPFKEAEIIVEAFAEIRKGKKPLIEKAKSKK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattagaaaaattaaaagaatttagggaattagggcttggtgaaaaggtatta
aaggtattatcaaaaaagggatatgaatctcctacacctatacaaaaattaacaatacca
gcacttttaaaaaatgataaagatataataggacaagcacagactggaacaggtaaaact
gctgctttttctttacctataatagaaaactttgaaacttcagatcatcatatacaagca
atagttttaactccaacaagagaattagctttacaagtagctgaggaaatgaatagttta
agtacaagtaaaaaaatgaaggtaatccctgtctatggtgggcaatctatagatatacaa
agaaaacttataaaaacaggagtagatgttgttgttggaactccaggaagagttatagac
ttaattgaaagaaagttattaaagttaaactcattaaagtatttcgttttagatgaagca
gatgagatgcttaatatgggatttattgaagatatcgaaaagatcttaacatttacaaat
gatgataagagaatgttatttttctctgcaactatgccaccagaaataatgaaaattgca
aaaactcatatgaaagaatatgaagtgttagcagtaaagagtagagaattaacaacagac
ttaacagaacaaatatattttgaagttaatgaaagagacaaatttgaagctttatgtaga
ataatagacttaacaaaggagttctatggaataattttctgtagaactaaaacagatgta
aatgaaatagtaggaagattaaatgacagaggttatgatgctgaaggtctgcatggagat
atagggcaaaactacagagaagtaactttaaaaagatttaaaactaagaaaataaatatt
cttgttgcaactgacgttgctgctagaggaatagacatcaatgatctaagccatgttata
aactatgctgtacctcaagaagttgaaagttatgttcatagaataggaagaacaggtcgt
gctggaaaagaaggtactgctataacttttattactcctcaagaatatagaagactttta
caaatacaaaaggcagttaaaaaagaaattagaaaagaaagtttacctgatgtaaaagat
gttattcaagctaaaaagtttagaataatagatgatatagggcaaattttaatagataat
gactatgataagtttaaaaaattagctaaagatttattaaatatggaagaagcagagaat
atagttgcctctttattaaaattaacatatagtgatgttttagatgaaagtaattacaat
gagatatctccagttaaaatggaagatacaggtaaaacaagacttttcattgctatgggt
agaaaagatggaatgacaccaaaaaaattagttgatttcatagttaagaaagctaaagta
aaacaagcatatataaaaaatgcagaagtttatgatgccttttctttcgtttcagttcca
ttcaaagaagctgaaataatagttgaagcctttgccgaaattagaaaaggtaaaaaacca
ttgatagaaaaagcaaaatctaagaaataa
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