Floricoccus penangensis: KIW23_00040
Help
Entry
KIW23_00040 CDS
T08197
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpen
Floricoccus penangensis
Pathway
fpen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KIW23_00040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpen03400
]
KIW23_00040 (mfd)
Enzymes [BR:
fpen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KIW23_00040 (mfd)
DNA repair and recombination proteins [BR:
fpen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KIW23_00040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
AAA_22
MFD_D3
TniB
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
URZ87485
LinkDB
All DBs
Position
11790..15347
Genome browser
AA seq
1185 aa
AA seq
DB search
MNIIDLLNEDRNLQTWESRFTTLSRTLLLGLSGSIKSLVMANAYDNDPDKYILITDTQYH
ASELFDELGNLLGDDKVVQYFSDDNVYADYAIASKDRVTYRLEALEFLIDPKRTGFFITP
LLSLRELLPSIENFKGAYQEIKVGQEVDLDNLADQLGHIGYERTQRVMTPGEFSRRGDIL
DLYSLDAEYPVRIEFFGDEIDGIRYFDVETQRSVEQLDFLVIKPANDFILSDEEFDKGVK
KLYKVIDKSDDDVFKSYLEEVVSAASNRYYHQDLRKFAEFFYKKETTLFDYFPKNVQFFL
DDFQKINEMNNKISLELADFILSEKNLGRYVEGQKYLADNFSKVRNYKPSSFFSNFQKGL
GNLRFDAIYNFNQHSMQDFFGQLGLLKAEIDRFVKNENTVVIVATPEKYGKMLQSLQDVD
IKFTETKEYDIKIKEVNLISSTAISKGFNFLDDKLVVITEQEIFGKVRKKRIRRSNNISN
AERLKDYNELEIGDYVVHKNHGIGKYMGIETIEVGGIHRDYLTIQYQNSDRISVPVDQLD
MLTKYTASEGKAPKINKLNDGRWKRTMRTVNKQVEDISEDLIKLYALRQSQKGYAFSKDD
DNQLEFDNNFAYAETEDQLRSIAEIKKDMEKERPMDRLLVGDVGFGKTEVAMRAAFKAVN
DHKQVAVLVPTTVLAEQHYSTMLERFSEFGVEIAVLSRFQTKSQQKDILDKLKKGGIDII
VGTHRILSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKSQVDVLTLTATPIPRTLHMSM
LGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDASLREISRGGQIFYLYNRVDTIEQKVA
QLSELIPEARIGYVHGQMNEVQLEDTLLDFVNGEYDMLVTTTIIETGVDIPNANTLFVEA
ADYMGLSQLYQLRGRVGRSNRIAYAYFMYDPDKQLSEVSEKRLDAIKGFTELGSGFKIAM
RDLSIRGAGNLLGAEQSGFIESVGFDLYSQLLEESVNSRLGRGNTKKTSNAEINIGIDAF
IPSDYITDERQKIEIYKRIREIDSRKYYENLQDELIDRFGEYPDAVAFLLEIGLLKYYAD
NALVDRMLKQNDTIVYTMSMAAKNVYLPQDYFDALSKTDLPVKLGEESGVMVLRFDIKNR
SDANYLSELISFTERLSEIRDEKDSLKKVSQEENELEETSEDGND
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaatattattgatttattaaatgaggataggaatttacagacttgggaatcaaggttt
acaaccttgtcaagaacactacttttgggattatctggaagtattaagagtcttgttatg
gccaatgcctatgataatgatcctgacaaatacatattaatcacagatacacagtatcat
gctagtgaactttttgacgagttaggaaatttacttggtgatgacaaagtagttcaatat
ttttctgatgacaatgtgtatgctgattatgctattgctagtaaggatagggtcacatat
aggctggaagccttggaatttctaattgatcctaaacgtacaggattctttattacacct
cttttgagccttagagagctactaccttcaatagaaaattttaaaggtgcttatcaggaa
attaaggttggtcaggaagttgatttagataatcttgctgatcagcttgggcatattgga
tatgaaagaacccagagggttatgactcctggggaattttcgcgtcgtggggatatttta
gatttatattctcttgatgcagagtatcctgtaagaattgagttctttggggacgaaata
gatggtataaggtattttgatgttgagacacaaagatcagttgaacaacttgattttttg
gttattaaacctgcaaatgattttattctttcggatgaagaatttgataaaggtgtaaag
aagctttacaaggtaattgataaaagtgatgatgatgtctttaaatcataccttgaagag
gtagtttcagcagcatcaaatagatactaccatcaagatttacgtaaatttgctgaattc
ttttataagaaggaaacaactttatttgattattttcccaagaacgttcaatttttctta
gatgatttccaaaaaataaatgaaatgaataataaaattagtcttgaattagctgatttt
atattgagtgaaaaaaatctaggacgttatgttgaaggtcaaaaatatttggcagataat
ttttcaaaggttagaaattataagccatcttctttcttttctaatttccaaaaaggtttg
ggaaatttaagatttgatgcaatatataattttaatcaacatagtatgcaagacttcttt
ggtcaactaggacttttaaaagctgaaattgatcgatttgtaaaaaatgaaaatacagtt
gttattgtagctactcctgaaaaatatggtaaaatgcttcaatctttacaagatgttgac
attaaatttacagaaaccaaagaatatgatattaaaattaaagaggtcaatctgatctct
tctacagctattagtaaaggcttcaatttcttagatgacaagctagttgtcataactgaa
caggaaatttttggtaaggtaagaaagaaaagaattcgccgatctaataatatttcaaat
gctgagcgtctaaaggactacaacgagcttgagattggtgattatgttgtacataagaac
catggtattggtaagtatatgggaattgagaccattgaagttggtggtattcatagagat
tacttgaccatccaatatcaaaattctgatagaatttcagttcctgttgatcaactggac
atgctgacaaaatacacagcaagtgaaggtaaagctccaaaaatcaataaacttaatgat
ggtcgatggaaacgtacaatgcgtactgtcaataagcaggttgaagatatctctgaggat
ttaatcaagctttacgctcttcgtcaaagtcaaaaaggatatgcattttcaaaagatgac
gataaccaattagagtttgataataactttgcttatgcagagactgaagatcaattgaga
agtattgctgaaatcaagaaagacatggaaaaagaacgtcctatggaccgtcttttagtt
ggagatgttgggtttggtaaaactgaggttgctatgcgtgcagcttttaaagcagtgaat
gatcataaacaagtagctgttctggtacccactactgtacttgctgaacaacactattca
acaatgcttgaacgatttagcgaatttggtgttgaaattgcagtgctttcacgtttccaa
actaagtcacaacaaaaagatatccttgataaacttaaaaagggaggaatagatatcata
gttggaacacatagaattctttcaaaggacgttgagtttttcgacctaggtctaatgatt
attgacgaagaacaacgctttggtgtaaagcataaggaaagattaaaagaacttaagtca
caggttgatgtattgaccctaacggcgacaccaataccaagaactttacacatgtcaatg
cttggtatacgagatctttcagttattgaaacacctccaaccaaccgttacccagttcaa
acttatgtaatggagacgaactatggtgtagttcgtgatgcatctttacgcgaaataagt
cgaggtggacaaatattctacctttacaatcgtgttgacactattgagcaaaaagtggcc
caattatcagaattaattcctgaagcacgtattggatatgtacatggtcaaatgaatgaa
gtacaacttgaagatactttacttgattttgtaaatggtgaatatgatatgttggttaca
acaacaattattgaaacaggtgttgatatccctaatgcaaatactctctttgtagaggct
gcagattatatgggactttcacaactctaccaattaagaggacgtgtaggtcgtagtaat
cgcattgcctatgcatattttatgtacgaccctgataagcagttatcagaagttagcgag
aaacgtttggatgccattaaaggcttcacagagctcggtagtggctttaaaattgccatg
cgggacctatctatccgaggagctggtaatctattaggggctgagcaatcaggatttatt
gaaagtgttgggttcgacctgtactcacaactacttgaagagtcagttaatagccgactt
ggtagaggaaatactaagaaaacaagtaatgctgaaattaacattggtattgacgcattc
attccaagcgattatatcactgacgaaagacaaaaaattgagatttacaaacgcatacgt
gaaattgatagcagaaaatactatgaaaaccttcaagatgagcttattgaccgttttgga
gaatatccagatgcagtcgccttcttgttagaaattggattactcaagtactatgctgat
aacgccttggttgatagaatgcttaaacaaaacgatacaattgtttacaccatgtctatg
gcagcaaaaaatgtttaccttccacaagattattttgatgccttatcaaaaactgatctt
cctgttaaattaggtgaggaatcaggagttatggttcttcgcttcgatataaaaaataga
agtgatgctaattacctgtctgaacttattagctttacagaaagacttagtgaaatcaga
gatgaaaaagattcgcttaagaaagtctcccaagaagaaaatgaattagaagagacatca
gaggatggaaatgattag
DBGET
integrated database retrieval system
