Floricoccus penangensis: KIW23_00945
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Entry
KIW23_00945 CDS
T08197
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpen
Floricoccus penangensis
Pathway
fpen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIW23_00945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpen03021
]
KIW23_00945 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpen03400
]
KIW23_00945 (rpoC)
Enzymes [BR:
fpen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIW23_00945 (rpoC)
Transcription machinery [BR:
fpen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIW23_00945 (rpoC)
DNA repair and recombination proteins [BR:
fpen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIW23_00945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
AvrE_T3Es
Motif
Other DBs
NCBI-ProteinID:
URZ87648
LinkDB
All DBs
Position
204202..207822
Genome browser
AA seq
1206 aa
AA seq
DB search
MVDVNKFQSMQISLASPRQIRTWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIICDRCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETPLEKKSLLSEREYREKMLEYGYGSFVAKMGAEAIQDLL
IDVDLDKEIAELKEELKTASGQKRVKAVRRLDILDAFRKSDNQLDWMVMDVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKMYQCGLPR
EMAIELFKPFVMAELVKREMAANIRAAKRKVERMDEDIWDVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGRAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMIFADPEEAVIAWRNGYVHLHSRVGI
ATKSLDKPWSDSQKDTILLTTVGKILFNSIMPAEFPYLNEPTMENLTSQTNDRYFVQAGG
DVVEAIKNLPEVQPFKKKNLGNIIAEVFKRFRTTETSEMLDRLKDLGYHHSTKAGLTVGI
ADIPVVEEKHEIVDAAHEKVEVITKQFRRGLITDDERYQAVTDVWRDAKAQLEDKLAKGQ
DFKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVISAITDGKEMVEPLE
ERLIGRYTSQTVINPETGEVIIGNDELITEDIASAIVAAGIEKVKIRSVFTCKTRHGVCK
HCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSEDITQGLPRIQEI
FEARNPKGEATITEVTGEVVEITEEASTRTKEVTVKGETDTRTYTIPYTSRTKVEVGDFI
HRGTPLTEGSIEPKHLLEVRDALSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKV
RIMDPGDTDLLPGTLMDVSDFADANEDTLVKGAVPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMQRYRNIEPQAHVPKDEVIEGE
IIEVTE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaataaatttcagagtatgcaaatatctctggcttcaccacgtcaaatt
cgtacttggtcatatggtgaagtaaaaaaaccagaaacaattaactaccgtacattgaaa
ccagaacgtgaaggactattcgatgaaagaatttttggtccaactaaagactgggaatgt
gcatgtggtaaatataaacgtattcgttataaaggtattatttgtgaccgctgtggcgtt
gaagtaactcgtgctaaagtacgtcgtgaacgtatgggacatatcgagcttgctgctcca
gtaactcacatttggtatttcaaaggaatcccttcacgtatgggattagccctagacatg
agcccccgtgctcttgaagaagtaatttattttgcttcatacgtggtaattgatccaaaa
gaaactccacttgaaaagaaaagtcttttaagcgaacgtgagtatcgtgaaaaaatgctt
gaatatggctatggttcattcgttgcaaaaatgggtgctgaagcaattcaagatctttta
attgatgttgaccttgataaagaaatcgctgaattaaaagaagaacttaaaactgcaagt
ggtcaaaaacgtgttaaagccgtacgccgtttagatattttagatgctttccgtaaatca
gacaatcaacttgattggatggtaatggatgttcttccagttattccaccggatttacgt
ccgatggttcaacttgatggtggacgttttgcaacaagtgacttaaatgatctatatcgc
cgtgtaattaaccgtaacaaccgtcttaagcgtttgattgaacttaatgctcctggtatt
atcgttcaaaatgaaaaacgtatgcttcaagaagctgtagatgccttgattgataacggt
cgtcgtggtcgtccaatcacaggaccagggaaccgtccgcttaaatcattaagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattca
ggacgttcagtaatcgttgttggaccaactcttaaaatgtatcaatgtggtctgccaaga
gaaatggctattgagttattcaaaccatttgtaatggctgaattagttaaacgtgagatg
gcagcaaatatccgtgcagcaaaacgtaaagttgagcgtatggatgaagatatctgggat
gtacttgaagatgtaattaaagaacatccagttctacttaaccgcgcacctactctacat
agacttggtattcaagcttttgaaccagtccttattgatggacgtgcaattcgtcttcac
ccacttgtatgtgaagcctacaatgccgacttcgatggagaccaaatggccgttcacgtg
ccactttctgaggaagcacaagcagaagctcgtatccttatgttagcagctgaacacatc
cttaaccctaaagatggtaaaccagtagtaactccttcacaggatatggtactaggtaac
tactacctaactatggaagaagctggtcgtgaaggtgaaggaatgatttttgctgatcct
gaagaagctgtaattgcatggcgtaatggctatgtacatttacactctcgtgtgggtata
gctactaaatcattagataaaccttggtcagatagccaaaaagatactattttattaaca
acagttggtaaaatattatttaactctatcatgccagcagaattcccatatttaaatgaa
ccaactatggaaaacttaactagccaaactaacgatcgctactttgtacaagcgggtgga
gatgttgttgaagctattaagaaccttccagaagtacaaccgttcaagaagaaaaatctt
ggtaatatcattgctgaagtattcaaacgtttccgtacaacagaaacttctgaaatgctt
gaccgtttgaaagaccttggttaccaccattcaacaaaagctggtcttactgtaggtatt
gcagatattccagtcgtagaagaaaaacatgaaattgtagatgctgcccatgaaaaagtg
gaagtaatcactaaacaattccgtcgtggtcttattactgacgatgaacgttatcaagct
gtaactgatgtttggcgtgatgcaaaagctcaacttgaagataaacttgctaaaggtcaa
gatttcaagaatccaatcgttatgatgatggactcaggagcccgtggtaatatctcaaac
ttctcacaacttgccggtatgcgcggacttatggctgcaccgaatggtcgtattatggaa
ttaccaatcatctcaaacttccgtgaaggattgtcagtattggaaatgttcttctcaact
cacggagctcgtaaaggtatgaccgatacagcccttaagacagccgattcaggttacttg
actcgtcgtctagttgacgttgcccaagatgtaatcattcgtgaagatgactgtggaact
gaccgtggacttgtaatcagtgcaattactgatggtaaagaaatggttgaaccacttgaa
gaacgtttaattggacgttacacttctcaaacagttattaatcctgaaactggtgaagta
atcattggaaacgatgagttaatcacagaagatatcgctagcgcaattgttgcagctgga
attgagaaagttaagattcgtagcgtatttacatgtaaaacacgtcatggtgtatgtaaa
cattgttatggggttaaccttgctactggtgatgctgttgaggttggtgaagcagttggt
acaattgcagcgcaatctatcggtgaaccaggtactcagcttacaatgcgtaccttccat
acagggggggttgcctcaagtgaagatatcactcaaggtcttcctcgtatccaagaaatt
tttgaagcacgtaatcctaaaggggaagctacaatcacagaagttacaggtgaagttgta
gaaattacggaagaagcaagtacacgtactaaagaagtaaccgtaaaaggtgaaactgat
acacgtacttacacaattccttatacttctcgtactaaggttgaagttggtgactttatt
caccgtggtactccacttacagaaggttcaattgaacctaaacacttacttgaagttcgt
gatgctttatcagtagaaacttatctacttgcagaagtgcaaaaagtataccgttctcaa
ggggtagaaattggagacaagcacgttgaggtaatggttcgtcaaatgcttcgtaaagtt
cgcatcatggatccaggtgataccgacttacttccaggaacacttatggatgtttcagac
tttgcagatgcaaacgaagatactcttgttaaaggtgcagtacctgcaactggtcgtcca
gttcttatgggtattactaaagcatcacttgaaactaactcattcttatcagcagcatca
ttccaagaaacaacacgtgttcttacagatgcagcgattcgtggtaaaaaagaccactta
cttggacttaaggaaaatgttatcatcggtaaaatcatcccagcaggtactggtatgcaa
cgttaccgtaacatcgaacctcaagcacatgtaccaaaagatgaagtaattgaaggtgaa
ataatcgaagttactgaataa
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