Floricoccus penangensis: KIW23_03840
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Entry
KIW23_03840 CDS
T08197
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fpen
Floricoccus penangensis
Pathway
fpen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIW23_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpen03019
]
KIW23_03840
Messenger RNA biogenesis [BR:
fpen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIW23_03840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
P8
ODP
Motif
Other DBs
NCBI-ProteinID:
URZ88177
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Position
806042..807769
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AA seq
575 aa
AA seq
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MSDIKIIPLGGVREFGKNMYAVEVDESIFVLDAGLKYPETEMLGVDFVIPQTTYLAENAE
RVAGIFLTHGHPDSIGGLPYLLAEVNVPVFASELTVELAKLNVKDYEATKKFNDFHIVNE
KTEIDFGGVNISFFSTTHTIPDSLGIVIGTKEGNIVYTGDFKFDPAVTQGYKTNLGRLAE
IGSQGVLALLSDSANALSTEQSASENEVAEKIYDVISDWEGRVIVASVAGNLARIQQTID
AAARAGRAVALTGHDMDRIVETARRLGKLTVDDGMIVPLKNIKNYADDEILILEAGRMGE
PIRAVADMATGRNKQVKIKEGDLVFAVTSPTVSMETFVAKTENIVYKAGGIMKLLAAEIK
VSGHANVRDLQTMIDIMQPKNLIPVQGEYRELEAHAECAMEVGVKPENIFIEKRGDILSY
EDGVFVPAGAVTADNIMIDGSGVGDIGSIVLRDRKILSEDGIFIAVITISKKDKKIISRA
KVHTRGFVYVKQSRDLIKDSANLVNETVSNYLEKDEFDWTEIKQEIRDALGKYLYEQTKR
RPVILPVVMEVRSEENLKNNRKKKAKKKAQANEEE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaataattcccttaggtggagtacgcgaatttgggaaaaatatgtat
gcagttgaagtggatgaatcaatttttgtactcgatgctgggttaaaatacccagagaca
gagatgcttggtgttgactttgtaatcccgcaaacaacttatcttgctgaaaatgctgaa
cgtgttgctggtattttcctaacacatggacatccagactcaattggtgggttaccatac
ctattagcagaagttaatgttccagtatttgctagtgaattaactgttgagcttgcgaaa
cttaatgtaaaagattacgaagcaacaaaaaaattcaatgattttcatattgtaaatgag
aaaactgaaattgattttggtggagtaaatatctctttcttcagtacaactcatacaatt
cctgatagtcttggtattgtaattggaacaaaagaaggaaatattgtttacactggtgac
ttcaaatttgatccagcagtaactcaaggatataaaacaaatcttggtcgtttggcagaa
atcggaagtcaaggtgttcttgccctcctaagtgattcagcaaatgctttatcaacagaa
caatcagcaagtgaaaatgaagttgctgaaaaaatttatgacgtgatatctgactgggaa
ggtagagttattgttgccagtgttgcaggtaaccttgctcgtattcaacaaactattgat
gctgcggctcgtgctggtcgtgctgttgctttaacaggtcatgatatggaccggattgtt
gaaactgcccgacgtctaggaaaattaaccgttgatgatggaatgattgttccacttaaa
aacatcaagaactatgccgatgatgaaattttgattttagaggctggtcgaatgggtgag
ccgattagagcagttgcagatatggcaacaggtcgtaataaacaggttaaaataaaagaa
ggcgatttagtatttgctgtaacaagccctacagtttcaatggaaacttttgtagctaag
actgaaaatatagtatataaagctggtggaattatgaaattgttagctgctgaaattaaa
gtttcaggacatgctaatgtgcgtgatttgcaaacaatgattgacatcatgcaaccaaaa
aatctaattcctgttcaaggtgaatatcgtgagctagaagcacatgccgagtgtgcgatg
gaagttggtgttaaaccagaaaatattttcattgaaaaacgaggcgatatcctttcatat
gaagatggggtatttgttccggcaggcgcagttacagcagataatataatgattgatggt
agcggtgttggtgacatcggaagtatcgtgcttcgagatagaaagattctctcagaagat
ggaattttcattgctgtaattactatcagtaagaaggataaaaagattatcagtcgtgct
aaagtacacacaagaggttttgtatatgtgaaacaaagccgtgatttaataaaggatagt
gctaacttagtaaatgaaactgtaagtaactatttagaaaaagatgaatttgattggact
gaaattaaacaagaaatcagagatgcactgggtaaatatttatatgagcaaactaagaga
cgtcccgttatcttgccagtagtaatggaagttcgttcagaagaaaatcttaaaaataat
cgtaagaaaaaagcaaagaaaaaagcacaagctaacgaagaagagtaa
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