Floricoccus penangensis: KIW23_06405
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Entry
KIW23_06405 CDS
T08197
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fpen
Floricoccus penangensis
Brite
KEGG Orthology (KO) [BR:
fpen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fpen03009
]
KIW23_06405 (rlmD)
Enzymes [BR:
fpen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KIW23_06405 (rlmD)
Ribosome biogenesis [BR:
fpen03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KIW23_06405 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_15
Methyltransf_31
Cons_hypoth95
TRM5-TYW2_MTfase
RrnaAD
DOT1
PrmA
N6_N4_Mtase
PCMT
ComR_TPR
MTS
Motif
Other DBs
NCBI-ProteinID:
URZ86722
LinkDB
All DBs
Position
complement(1351363..1352721)
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AA seq
452 aa
AA seq
DB search
MNNFNKNDIVEVEVIDLTHEGAGVAKIDNYPFFVENALPGEVIKMRVMKTGKNFGYGKVE
EYVKESDDRVGDVNSQYLRTGIADISHLTYPAQLDFKKKQVETVLSKVAKKNDIKVMDTL
GTENNTGYRNKAQIPVRRVNGQTETGFFRKNSHDLVPVEDFLIQDKEIDQVVLYTRDLLR
RFDIKPYHEINKTGLIRNIMVRRGHHSGEIMVTLITTKKKVFRIDQIVAALTEKFPNIVS
IMQNVNESHGNALFGPDWFVLYGKEYIEDQMLGNTYQISGPSFYQVNTEMAEKLYQKAID
FADLKEDDVVIDAYSGIGSIALSVADKVKKVYGVETVESAVINAGKNAELNDIKNVDFTV
GKAETTMARWLEEGIEPDVIFVDPPRKGLDEEFIKSATKTGARSIVYVSCNPSTFARDVL
RFEEEGYKLQKVQPVDLFPQTHHVELVSLFTK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttaataaaaacgacattgtcgaagtagaagtaattgatttaacacatgaa
ggcgcaggagttgccaaaattgacaactatcccttctttgtagaaaatgcccttccaggt
gaagtgattaaaatgcgagttatgaaaactggcaaaaactttggatatggtaaagtagaa
gaatatgtaaaagaatctgatgatcgtgtaggcgatgtaaatagccaatacttacgtaca
ggtattgcggatattagccatctaacttatccagcacagcttgatttcaagaaaaaacaa
gttgagacagtactttcaaaagttgctaagaagaacgatattaaagtgatggatactctt
ggaactgaaaataacactggataccgcaataaggcacaaattccagttcgtcgagttaat
ggacaaacagaaactggattcttcagaaaaaattctcatgacctagtaccagtagaagac
tttttaatccaagataaagaaatcgatcaagtggttctctacactcgtgacttgctacgt
cgctttgacatcaaaccataccatgaaatcaataagacaggccttatccgtaatattatg
gtaagacgtggacatcattctggtgagattatggtgacgcttatcactactaagaaaaaa
gtttttagaattgaccagattgttgctgccttgactgagaaattccctaacatcgtgtct
attatgcaaaatgttaatgaaagtcatgggaatgccttatttggaccagattggtttgtt
ctctatggtaaggaatatattgaagaccaaatgcttggtaatacataccaaatttcagga
ccatcattttatcaagtaaatactgaaatggccgaaaaactttaccaaaaggctatcgat
tttgctgatttaaaagaagatgatgtggtaattgatgcttattctggtattggttcaatt
gcactttcagttgctgataaagttaaaaaagtatatggtgtagaaacagttgaatctgca
gtaattaacgcgggtaaaaatgctgaattaaatgatatcaagaacgttgactttacagtt
ggaaaagctgaaactacaatggcaagatggcttgaggaaggaatagagccggatgtaatc
tttgttgatccaccaagaaaaggactagacgaagaattcatcaaatcagctacaaaaaca
ggagcacgtagcatcgtctatgtatcatgtaatccatcaacattcgcgcgtgatgtatta
agattcgaagaagaaggctacaaactccaaaaagtacaaccagtagacctattcccacaa
acccatcatgtcgagctagtctctctatttacgaagtaa
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