Floricoccus penangensis: KIW23_08880
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Entry
KIW23_08880 CDS
T08197
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fpen
Floricoccus penangensis
Pathway
fpen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIW23_08880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpen03019
]
KIW23_08880
Messenger RNA biogenesis [BR:
fpen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIW23_08880
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
PE-PPE
Motif
Other DBs
NCBI-ProteinID:
URZ87183
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Position
1848963..1850651
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AA seq
562 aa
AA seq
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MSTKLNIKNNEVGVFAIGGLGEIGKNTYGIQYQDEIILIDAGIKFPEDDLLGVDYVIPDY
SFIVDNIDRIKGLFITHGHEDHIGGIPFLLKQANIPIYAGPLSLALIRGKLEEHGLLRDA
TLYEINENSVIKFRKTSISFFNTTHSIPEPLGVVVQTPPGKIVATGDFKFDFTPVGKPAD
LHRMAQLGDEGVLLLLSDSTNAEIPTFSHSEKVVGQSILKIFEKIEGRIIFASFASNIFR
LQQAVEAAVKTGRKVVVFGRSMEKAIVNGLELGYIKAPKGTFIEPHEVNQYPGHEMLIMC
TGSQGEPMAALSRIANGMHRQVTLQPGDTVVFSSNAIPGNTHGVNQLINSISEAGAKVIY
GKMNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMLKIHAGLAQDTGVPKENCFIME
NGDVLALTKDTARPAGHFNAQDTYVDGSGIGDIGNAVLRDRHELSDDGVVLAVATVDFKS
KLILAGPDLLSRGFIYMRGSGDLIRSSQRVLFNAIRKALNAENSNESTVAKAMTDALRPF
LYKETERNPIIIPMVLTPDEEK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaaaactaaatattaagaataatgaagtcggtgtctttgccatcggtggattg
ggagaaataggtaaaaatacctatggtatccaatatcaagatgaaattattctgattgat
gctggtattaaattcccagaagacgacttattaggtgttgactatgtcatacctgattat
agctttattgttgataacattgatcgtattaaaggtctatttatcactcatggtcacgaa
gaccacattggaggaatccctttccttttaaagcaagctaatattcctatttatgcaggt
ccattatcacttgctcttatccgtggtaaacttgaagaacatggtcttttacgcgatgct
actctatatgaaattaacgaaaacagcgttattaaattccgtaaaactagcataagcttc
ttcaacactactcactcaattccagaaccacttggtgttgttgttcaaacaccaccagga
aaaattgtcgctactggtgactttaaatttgactttacaccagttggtaagccagcagat
ttacaccgcatggcacagcttggtgacgaaggagtattgcttcttctttcagattctaca
aatgctgaaataccaactttctctcacagtgaaaaagttgttggtcaatcaattttaaaa
atcttcgaaaaaattgaaggacgtattatattcgcaagtttcgcctcaaatattttccgt
ttacaacaagctgttgaagcggccgttaagactggtcgtaaagttgttgtatttggccgt
agtatggaaaaagctatcgtcaacggtctcgaacttggatacatcaaagctccaaaagga
acattcattgagccccatgaagtaaaccaatatccaggacacgaaatgttaatcatgtgt
acaggtagtcaaggtgaaccaatggcagcccttagtcgtattgctaatgggatgcataga
caggttacacttcaaccgggtgatacagtagtattctcatctaatgcaattcctggtaat
actcatggagttaatcaacttatcaattcaatttccgaagcaggtgctaaggttatctat
ggtaagatgaacaacatccatacatcaggtcacggtggacaacaagaacaaaaacttatg
cttcgccttatcaaacctaagtatttcatgccagttcatggtgagtaccgtatgttaaaa
atccatgctggactcgctcaggatacaggtgtaccaaaagaaaattgctttattatggaa
aatggtgatgtactcgccttaacaaaagatactgctcgtcctgctggtcatttcaatgct
caagatacttatgttgatggatctggtattggagatatcggaaatgcagtacttcgtgat
cgtcatgaattatctgatgatggtgttgtacttgctgttgcaactgttgatttcaagtca
aaattaattctcgcaggtcctgaccttctaagtcgtggatttatctacatgcgtggatca
ggtgacttaattagaagtagtcaacgtgtacttttcaatgctatccgtaaggctctaaat
gctgaaaactcaaatgagtctacagtagctaaggcgatgactgatgcccttcgtcctttc
ctttataaggaaactgaacgaaatccaatcattattccaatggtgcttacacctgacgaa
gaaaaataa
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