Fontisphaera persica: NXS98_12620
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Entry
NXS98_12620 CDS
T09048
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpes
Fontisphaera persica
Pathway
fpes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NXS98_12620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpes03019
]
NXS98_12620
Enzymes [BR:
fpes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NXS98_12620
Messenger RNA biogenesis [BR:
fpes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NXS98_12620
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Utp25_C
P-loop_SecA
TPK_catalytic
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
WCJ58561
LinkDB
All DBs
Position
complement(3372838..3374073)
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AA seq
411 aa
AA seq
DB search
MGFKQFGLSPALNQGVQAMGYTDPTPIQLRAIPLLMEGKDVIGSAQTGTGKTAAFALPIL
HHLGEPADGPRALILEPTRELAAQVETAFRDLARFTRLRVAVVYGGVGYGAQLAALRAGV
DVLVATPGRLLDHLERRAVRLDRVQFLVLDEADRMLDMGFLPDVRRIVERCPRKRQTALF
SATIPPEIETLIQWAMRQPVTVEVGVRRRPAETVKHVIYPVSDYQKTDLLLALLERVNYD
SVIIFCRTRERADHVAALLKRHQHAVAVLHSNRTQMEREQALRGFRDGRYEVLVATDIAA
RGLDIANVSHVINYDVPQHPEDYVHRIGRTGRAEQAGDAFTLMVAEDMMHVQAIERFIGQ
KIPRVRLEGFEYKYTALFEQDKPGASTAPVKVRGARVSGGYYFGPVRRRRR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaagcagtttggactttcccctgccctcaaccagggggtgcaggccatgggg
tacaccgatccgacgccgattcaactccgcgccatcccgctcctcatggagggcaaggat
gtcatcggcagcgcgcagacgggcacaggcaaaaccgccgcttttgccctgccgattctc
catcacctgggcgaaccggcggacggcccgcgcgcgttgattctggaaccgacccgcgag
ctggccgcgcaggtggagacggctttccgggatttggcgcgtttcacccggttgcgcgtg
gccgtggtctatggcggcgtgggttacggggcgcaactggcggccttgcgcgccggggtg
gatgtgctggtggccacgcccgggcggctgctggaccacctggagcgccgcgccgtacgg
ctggaccgcgtgcagtttctggtgctggacgaggcggaccggatgctggacatggggttt
ttgccggatgtccggcgcattgtggaacgttgtccccgcaaacgccagacggccctgttt
tccgccaccattccgccggaaattgagacgctcatccaatgggccatgcgccagccagtg
acggtggaggtgggcgtccggcgccggccggcggagacggtcaagcatgtcatctatccg
gtcagcgattaccaaaaaacggatttgttgctggccctgttggagcgggtcaactacgat
tcggtcatcattttctgccgcacccgggagcgggccgaccacgtggccgccctgctcaag
cgccatcaacatgccgtggcggtgctgcattccaaccgcacgcagatggagcgcgagcag
gccctgcgcggtttccgcgacggccgttatgaggtattggtggccaccgatattgccgcc
cgcgggctggacatcgccaatgtcagccacgtcatcaattacgatgtgccccaacatccg
gaggattacgtgcaccgcatcggccgcaccggccgcgccgagcaggcgggggacgccttc
accctcatggtggcggaggacatgatgcacgtgcaggccatcgagcgcttcatcggccag
aagattccccgcgtgcgcttggagggatttgaatacaagtacaccgccctgtttgagcag
gacaagccgggagcctcgacggccccggtcaaagtgcgcggcgcgcgcgtgagcggagga
tactactttggccctgtccgccgccggcggcggtga
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