Mangrovivirga cuniculi: DCC35_18670
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Entry
DCC35_18670 CDS
T05953
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpf
Mangrovivirga cuniculi
Pathway
fpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC35_18670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpf03019
]
DCC35_18670
Enzymes [BR:
fpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCC35_18670
Messenger RNA biogenesis [BR:
fpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCC35_18670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
CMS1
Cas3-like_C_2
HEM4
Utp25_C
ANIS5_cation-bd
Motif
Other DBs
NCBI-ProteinID:
QCK16608
UniProt:
A0A4D7KB49
LinkDB
All DBs
Position
4197497..4198792
Genome browser
AA seq
431 aa
AA seq
DB search
MTFNELGLNKSILHALNKQGYTNPTPIQERAIPVLLQGKDLLGCAQTGTGKTAAFTIPIL
QHLENEPSQGKGKRKIKSLVVTPTRELAVQIGESIAAYGEFTHLKHTVIFGGVKQGAQTK
ALHHGVDILVATPGRLLDLINQGFISLDHIKYFVLDEADQMLDMGFIHDIKKIIKKLPKK
RQSLFFSATMAKPIVELSQQILGEPEQITIKPEKPTAEKVTQKVYHVSKRNKNNLLLHIL
KEGSEESTLVFSRTKHGANKIVKKLNQAGIEADAIHGNKSQTARQKALNKFKKGDSSVLV
ATDIAARGIDVDGLELVINYDLPNVAETYVHRIGRTGRADKAGVAVSFCDRDEKAYLRDI
QKLIKQEVTIVEGHPYERPDGEEEPEKKPCSKKPERKLSKRHQHHNKEKNQRNFRRKKHH
KGGNRGGRNNS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgaattagggcttaataagtctatcctgcatgctttgaataagcaagga
tacacaaaccctaccccgatacaggaaagagccattcctgttttattacaaggtaaagat
cttttaggatgtgcacagaccggtaccggtaaaacagcggcatttactatccctatactt
caacatctggaaaacgaaccttctcaagggaagggaaaaagaaaaataaaatcgttggtt
gttactccaacacgagaacttgctgtacaaatcggagaaagtattgctgcttatggtgaa
ttcactcatttaaagcatacagtaatctttggcggtgtaaaacaaggtgctcagaccaaa
gccctgcatcatggagtagatatccttgtagcaacacccgggcgattactcgatctgatc
aatcagggatttatttctcttgatcatataaaatattttgttcttgacgaagcagatcag
atgctcgacatgggctttatccatgatattaaaaagatcatcaagaagcttccaaagaaa
aggcaatctcttttcttttctgcgacaatggctaagcctattgtagaactgtcacagcaa
atacttggcgaaccggagcagatcaccatcaaacctgaaaagcctacagccgaaaaagtt
actcagaaggtttaccatgttagtaagaggaacaaaaacaatctccttttacacatttta
aaagaaggttctgaagaatctacacttgtattttcacgaactaagcatggagcaaataaa
atcgttaaaaaacttaatcaggcaggcatcgaggcagatgcaatccacggaaataaatcg
cagactgctcgtcaaaaagcgttaaataaattcaagaaaggtgactcttcagtattggtt
gcaactgatattgccgcaaggggtattgatgtagacggacttgaattggtgatcaattat
gaccttccaaacgttgctgaaacttatgttcacagaataggtcgtaccggaagagcagac
aaagccggtgtagctgtatcattttgcgacagggatgaaaaagcctacctcagagacatt
caaaaattaattaaacaggaggtcactatcgtcgaaggccatccttatgaaagaccggat
ggtgaagaagaacctgaaaagaaaccgtgtagtaagaagccggagcgcaagttaagtaag
cgtcatcagcatcataacaaggaaaaaaatcaacggaatttcaggagaaaaaaacaccat
aaaggaggtaaccgcggaggcagaaataatagttaa
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