Francisella philomiragia subsp. philomiragia ATCC 25017: Fphi_1242
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Entry
Fphi_1242 CDS
T00652
Name
(GenBank) HrpA-like helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fph
Francisella philomiragia subsp. philomiragia ATCC 25017
Brite
KEGG Orthology (KO) [BR:
fph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fph03019
]
Fphi_1242
Enzymes [BR:
fph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Fphi_1242
Messenger RNA biogenesis [BR:
fph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Fphi_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
nSTAND_NTPase5
AAA_19
WHD_HA2
RsgA_GTPase
NTPase_1
nSTAND3
T2SSE
ABC_tran
NACHT
ResIII
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABZ87467
UniProt:
B0TXK9
LinkDB
All DBs
Position
1354822..1358622
Genome browser
AA seq
1266 aa
AA seq
DB search
MNTNKTSFNDYLNQIPTKLRGKFISAINNNKLPRQQLLTDLQLLAEQTSQKILPKITYPD
LPVAEKVDDIKKLIEDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAAR
SIASRVATEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDKFLSQYEVIIIDE
AHERSLNIDFLLGCIKKILPYRPDLKVIITSATIDHQKFIDYFQNAKDITISGRTYPVEI
RYQNDEDFEEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQDLRFTEVLPLF
SRLSNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRL
PIEKISQASANQRAGRCGRLSAGVCIRLYSEEDFNNRKEYTDPEILRTNLASVILQMLFL
KLGSIQDFPFIDSPDSRFVKDGFKLLFELQAISELNYSKPKITDDGMKMAIMPLDPKLAK
IVIEGHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHAIDKDKSSDFIAILNLANR
LNSDLKSLSNREKKEYFKKNFISPVRFNEWNDIYRQIVEVVHQFKWKLSSNEKLNYENLH
KAIASGFLSNVGFNYENAEYLGARGLKFFIFPGSSQFKAKPKWLLSSEIVETTKTYARNV
AKIEPEWLESLAEHLIKKHYDEPVWSKKRRAVVVNERVTLYGLEIVSKRSVQYSKINPQE
AREIFIREALVNGDFDSKAYFYQQNLKLINQVEELENKSRRKDILVDEEVMFAHYDSFIP
DDVCSGATFDKWLKSVTKEQQKGFIFDIESLMQHDAKEITQQKFPDVLTIADMHLPLEYH
FDPLDERDGATVTVPIVFINDINPTVLEWGVYGFLYDKIVALLRALPKNIRKNCVPVPTY
AQAIFESIDFDKDRHSPLKSIIAKHITRIVGFVVDETVWQDEELEKHLVLNVKVVDEQGK
TLAVGKDIHILKQKLKNLVAKPKQEVDETVYYDWDFADIVMTSQIKEYCITVKVYNCLEE
YKDGVKLSYKATFDEAKLCMQKSLKRLIKLRLQNQLSKNIKSNDLTSLSMSLKLSDSKDN
VVDKAMDLSFFDNIELPYTKADFEKFYAFGMQKFALNKTKVEALLLEITKFKSQLEKKLN
VKKIPLNFIELFTDVRNELTELFTDDYISQPVEFLQRYKYYLQALENRLEKAKLNLQRDR
GYQVEVNELRSKLAKKITANHIGKSELIGIRVSNLIQELWVSWYLQSVKTIESVSYKKIL
AYINEI
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaataaaacttcatttaatgattatcttaatcagatacctaccaaacttcgt
ggcaagtttatttcagccattaataacaataagttaccaagacagcagctactgactgat
ttacagcttttggctgaacagactagccaaaagattttgcctaaaataacttatccggat
cttcctgttgctgaaaaagttgatgatataaaaaagcttatagaagataatcaggttata
gttgtagcaggagagacgggttctggtaagtcaacacaattacctaagatatgtcttgat
ttggggctaggtaaacgcggattaattggacatactcaaccgagaagacttgcagctaga
tctattgctagtagagtcgctactgagattggtgatcaatcaaaagtgtcttttaaaata
cgtttttcagatcaaacttctgaaaatactttaatcaaagtgatgacagatggtgtgtta
ctatctgaaatcaagaatgataagtttttatctcaatatgaggttatcattattgatgag
gctcatgaaagaagtttaaatattgactttctacttggttgtataaaaaagatactacca
tatagacctgatttaaaagtaatcattacctcagcaactatagatcatcagaagtttata
gattattttcagaatgctaaagatattacaattagtggtagaacataccctgttgaaatc
cgttatcaaaatgatgaggattttgaagagttttcattacaagagagaatattgtatgct
cttgatgagcttggcagaggagacgttttagtctttttgcctacagaaagagatatccat
gaaacattagcatatttaaataaacaagatcttagatttacagaagttttacctttgttt
tcgagattatcaaataaagatcaaaacaaaatattcaacccagagggttctgtacgtagg
gttatcttagcaaccaatgttgctgaaacatctctgacagtgccacgcataaaatatgtg
atagattcaggcttagcgcgaataagtagatacagctatcgcaccaaggtgcagcgccta
ccgatagagaaaatttctcaagcaagtgctaatcaaagagccggtcgctgtggtagatta
tcagctggtgtttgcatacgtctatatagtgaagaagattttaataatcgtaaagaatat
accgatcctgagattttacgtactaatttagcatctgttattttgcagatgttgttttta
aagctaggaagtatccaagattttccatttatagactcgcctgattcaagatttgttaaa
gatggttttaagcttttatttgagctacaagcaatatcagagcttaattattcaaaacct
aaaattactgatgatgggatgaagatggcaattatgcctttagatcctaagttagcaaaa
atagttatagaaggtcatagacaaaatacgcttagagagattgtttcgattgttagcttt
ttaagtgtacaggacccgcgtgagagacctctgaattttcagcaaaaagctgatgaaaaa
catgctattgataaagataaatcttctgatttcatagcgattttaaatttggcaaataga
ctaaactctgatttaaaaagtttatcaaatagagaaaaaaaagaatattttaaaaagaat
tttatttcacctgttagatttaatgagtggaatgacatttatcgacaaattgttgaagtt
gttcaccagtttaaatggaaattatcgtcaaatgaaaagcttaattatgaaaacttacac
aaagctatagccagcggatttttgagtaacgttggatttaattatgaaaatgctgagtat
ctaggagctagagggctcaagttttttatattccctgggtcttctcagtttaaagcaaag
ccaaagtggttgctttcatcggaaatagttgaaactaccaagacatacgctcggaatgtt
gctaaaatagagcctgaatggttagagagcttagcagagcatcttatcaaaaagcattat
gatgagcctgtttggagtaaaaagcgtagagctgttgtagtcaatgaaagagtaactctt
tatggcttagagatagtttcaaaaagatctgtgcaatactctaagataaatcctcaagag
gctagagagatattcattcgagaagctcttgtgaatggtgactttgattctaaagcgtat
ttctatcagcaaaatcttaagcttataaatcaagttgaagagctcgaaaacaaatcacgc
cgaaaagatattttggttgatgaagaggtaatgtttgcacattatgatagctttatccca
gatgatgtttgtagtggtgcaacatttgacaaatggttaaagtcagtcacaaaagagcag
caaaagggctttatctttgatatagaaagtctaatgcagcatgatgctaaagaaatcacg
caacagaagtttcctgatgtcttaactatcgcagatatgcatttaccattagaatatcat
tttgatccactagatgagagagatggtgcaaccgttactgtaccaatagtttttatcaat
gatataaaccctactgttttagagtggggagtctatggttttttgtatgacaagattgtc
gctttgttacgtgcattaccgaaaaatattcgtaaaaattgtgtgccagtgccaacttat
gctcaagctatatttgaatcaatagattttgataaggatagacactctcctttgaagtct
attattgccaaacatattacgcgaatagtaggttttgtggtagatgagacggtgtggcag
gatgaggagctggagaagcatcttgtgttgaatgtaaaagttgttgatgagcaaggtaaa
acactagctgttggtaaggatattcatatattaaagcaaaagcttaaaaaccttgtagct
aaaccaaaacaagaagttgatgagacggtttattatgattgggattttgcagatattgta
atgactagtcaaatcaaagagtactgcataacggtcaaagtctataattgtttggaggag
tataaagatggcgtgaagctatcttataaggcaacattcgatgaagccaagctatgtatg
caaaagtctttgaaaaggttaattaaactacgcttacagaatcagttatcaaaaaatatc
aaaagtaatgacctaacaagcttatcaatgtcgttaaaactaagtgactcaaaagataat
gtggttgataaagctatggatttgagtttttttgataatattgaattgccatataccaaa
gcagattttgaaaaattctatgcttttgggatgcagaaatttgctttaaataaaaccaaa
gttgaagcattgcttttagaaataacaaagtttaagtcgcagcttgaaaaaaaacttaat
gttaaaaaaataccacttaattttatcgaactttttacagatgttaggaatgagcttact
gagctttttacagatgattatatctctcaacccgtagagtttttacagaggtataaatac
tatcttcaagccttagaaaataggctagaaaaagctaaattaaatctccaaagagatcga
ggatatcaagtagaagttaatgagctaagatctaaattggctaaaaaaataacagctaat
catattggtaaaagtgagttgattggtataagagttagtaacttaattcaggaattatgg
gtgtcatggtatttacaaagtgttaagaccatcgagtcggtatcatataagaaaatttta
gcttacataaatgagatatag
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