Francisella philomiragia subsp. philomiragia ATCC 25017: Fphi_1434
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Entry
Fphi_1434 CDS
T00652
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fph
Francisella philomiragia subsp. philomiragia ATCC 25017
Pathway
fph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fphi_1434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fph03019
]
Fphi_1434
03009 Ribosome biogenesis [BR:
fph03009
]
Fphi_1434
Enzymes [BR:
fph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Fphi_1434
Messenger RNA biogenesis [BR:
fph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fphi_1434
Ribosome biogenesis [BR:
fph03009
]
Prokaryotic type
rRNA processing factors
Fphi_1434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Flu_C_NS1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
ABZ87659
UniProt:
B0TYI3
LinkDB
All DBs
Position
complement(1567295..1569967)
Genome browser
AA seq
890 aa
AA seq
DB search
MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ
LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF
QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE
NKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ
KPQKSQDNRPQKDINQRDDRKANNNDRSDNKNNNKGQKPQVQKSQDNRQERDNNQRNDRK
NNDNRNDRNKNKLSSDKFDKKSNNRGSSRSNNLNLNNAEEVVDITQLKYQNQTAEKTDNI
KKVISKNPEEFVSVMVKDVLENYNSLKDDGATKVATEEKAKTSKYLKFDTVLVDKEITLL
KEAARQAEKAKQAEKIQNTEVEDSNNIHAEIKETIEIVDEVVVKEEQSKKAKLEKDDKTS
EQNSVKKEKPKTTKNNKKEKTVEKANKQNQPEPEYINYSPALDFESQSII
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatactaataaatagtaaaagtagtgaagaaacaagaatcgctactttagat
aatggaaaacttattgatttagatattgaaaatgttgatagagagcagaaaaaagctaat
atttataagggctatatttctagaattgaaccgagcttaaatgcaatatttgtcaactat
ggtgaagataaaaatggttttttaccattcaaggaagtttctgagtattatctaaaagac
gtaccaaatggtgaaaatattgcacatcttctttcagaaggtcaagagttaatagtacag
attgacaaagaagagcgtggtgataaaggtgcagctttaactacatttatcacacttgca
ggctcatacatggtgttgctaccaaacaacccagatggtggcggtatttcacgtcgtgta
gagggtgaggatagggaaaaacttaagaaatacctaaaagatttaaacatccctaaaaat
atgagtgtaattgcaagaactgcttgtgtagagtgttcttttgaagagttaaaacatgac
tttgatactctagttgaattatgggactcaatatttaaggcttatcataaaatcaaaaag
cctgatctacttcataaagagagtgacataatcgtcagaacagttagagatcatctaaaa
gaagatgttaaagaaattattgtagattctaaagaatgctatgaagatgttaaaagacaa
cttggcttacttagacaaagttttgatattaacaaagttaagttatataacgaagagtta
cctatatttgcacagtttggtatcgatcaacaaatagaaaatgcctataagagagaaatt
agattaccttctggtggttctattgtaattgacacaacagaagctttggttgctattgat
gttaactcatctcgtgctaacaaagctgaagatgttgaaactactgctttcaaaacaaac
ttagaagctgctgaagaagttgctcgtcaacttagaatcagagatcttggtggtctagtt
atcgttgattttattgacatgtcattctatccaaatagaaagcaagtcgaagaaaaatta
atggaagctctgcagcaagataaagcacgcattcaaatgtcacgcatatctaaacttgga
cttgttgaaatatctagacaacgcttaagctcatcaatcaatgaaagtgtaatgcaaaag
tgccctcgttgtgacggacacggtttcataaaaacaactcaagctactgcacttactatt
ttacgtaaaattagagcagaagctatcaaagaagatactaatgagatacgtgttcaggtc
cctgttgatatagctgcatatatactaaatgagaaaagagatagcattgttgaaattgaa
agaatctctgaagttaaagtcatgttaattcccaacttcaacatggagtctcctaagttt
caaatgcaaagaatttggggtactagctacaaatcaaaccgtacaagttctgacttaata
gaagatgtatacaacgttgaaattcctaaagcgggtaaaaagaaagttgctgctgttgaa
ctaagtaaacctatatctgaagatcagagcgtaagccctaaggaagataataaacttgaa
aacaagaatattgaaactactgttcaaaacaacacaaacaaaactagtgaaaagcaagag
ccaaagaaaaaagggtttttcagtaaactactagataagcttacaggtagtaatgaagtt
attgctgttgagaataagaaacctcaaaataaacaatacaacaataaagataaggctcaa
aaacctcaaaagtctcaagataacagaccgcaaaaagacattaatcaacgtgacgatcgc
aaagctaataataatgatcgcagtgataataaaaataataataaaggtcaaaaacctcaa
gtccaaaagtctcaagacaacagacaagaaagagacaataaccagcgtaacgatcgtaaa
aacaatgacaataggaatgatcgtaacaaaaataaattaagtagtgataagtttgataaa
aaatcaaacaatcgtggtagtagcagaagcaacaacctaaatcttaataatgctgaagag
gttgttgatattactcagcttaagtatcaaaatcaaactgctgaaaaaactgacaatatc
aagaaagtaatatctaaaaatcctgaagagtttgtctctgttatggttaaagatgtttta
gaaaactataacagcttaaaagatgatggtgctacaaaagtagctactgaagaaaaagca
aagactagtaaatatctaaaatttgatactgttttagtcgataaagaaataactcttctt
aaagaagctgctagacaagctgaaaaggctaaacaagccgagaaaatccaaaacactgaa
gtagaggatagcaacaatattcatgcagagataaaagaaactattgaaatagttgatgaa
gtagttgtaaaagaagagcaatctaaaaaagctaaactagaaaaagatgataaaacatct
gaacaaaatagcgtaaaaaaagaaaagcctaaaactactaaaaataataaaaaagaaaaa
acagttgaaaaagctaacaaacaaaatcaacctgagccagaatacataaattattctcca
gctcttgattttgaatcacaatcaataatctaa
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