Fluviibacter phosphoraccumulans: SHINM1_001090
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Entry
SHINM1_001090 CDS
T07031
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SHINM1_001090 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpho03021
]
SHINM1_001090 (rpoD)
Transcription machinery [BR:
fpho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHINM1_001090 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BCA64507
LinkDB
All DBs
Position
complement(109585..112131)
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AA seq
848 aa
AA seq
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MATKPKTAAKKTAKPVAKSAPAKKPAVKASKPIAKPVSKPVAKAIVKKAPAKVASVKKPV
AKPAAKTTKPVAKPAAKKAPVKSTAPKKTVTKATTTKTTKLAAPSKAPVKAAAKPALKKP
VTKTTPKVTTKPAVTKAVAKPTPAKAPVAKAPVTKTVVKAAAPVKAVASVTPPAKVTPKK
AEPVPVKVEVAPAAAEETSAVKGKGKAKGKDSKRLLGSTSVQQISPEERKARITSLIKMG
KERGYLTHAEINDHLPDTVMEAEQVEAMITTFNDLGIRVFDEAPAAEDMLMTDAAAPVAD
DEVVEEQAEQALATVDSEFGRTTDPVRMYMREMGTVELLTREGEIVIAKKIEGGLRDMVQ
AISACPIVVAEIIEMAKKVAIDEMKIDELVDGLVDLEAEEQMLAASAAAAAAASAATEDE
DIDDEDEEDSGEAKAAATAASLAKLKDAALERFAKIEALHSKEIKALKTKGTTDPNYQRA
RKQISEELLNIRFNSRTIEKLCDRVRSLMEQIRRAERTVLSICVDKCNMPRDHFIKNFPP
NIVNLKWIEKEVMNAPKHTQGILERNVPAVHEWQKKLIAMEENLGITLAEVREINKQMTK
GERHARAAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGFEPDPATLAIKM
EMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDQATLSPLEAAMNASLHEVTKDI
LDGLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKL
RSFVDTNN
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaacccaaaactgctgccaagaaaaccgccaaacctgtcgccaaaagtgcg
ccagcaaaaaaacctgcggttaaagccagcaagcccatcgccaaacccgtgagcaaacct
gtcgctaaggcaatagtaaaaaaagcacccgccaaggtcgcatcggtgaaaaaacccgtt
gctaagcctgccgcaaaaacaactaaacctgtcgccaagccggccgctaaaaaggccccg
gttaaatcgactgcacccaagaaaactgtgactaaagctacgacaacaaaaacgaccaag
ttggccgcaccgagcaaagcacctgttaaagctgctgccaagccggctcttaaaaaacct
gttaccaaaaccacacccaaagtcaccaccaaacccgccgtaaccaaagcggtcgctaag
ccgacaccggctaaagcgcctgtcgccaaagcgccggtaacaaagacggtcgtcaaggca
gccgcaccggtcaaggccgttgcgagtgtcacgccgcccgccaaagtaacgccgaaaaaa
gccgaaccggttccggtcaaagttgaagttgcacccgctgccgctgaagagacctctgct
gtcaaaggcaaaggcaaggccaagggcaaagacagcaaacgcctgctaggttctacttct
gtccagcagatttcgcctgaagaacgcaaagcgcgtattacttccctgatcaagatgggc
aaggaacgcggctatctgacgcacgccgaaatcaatgaccacctgcccgacaccgtgatg
gaagccgagcaagtggaagccatgatcaccactttcaacgatctgggcattcgcgtcttt
gatgaagccccagccgctgaagacatgctgatgaccgatgccgctgcaccggttgccgat
gacgaagtcgttgaagagcaagccgaacaggctctcgctaccgttgattcggaatttggc
cgtacgacagaccctgtacggatgtacatgcgcgaaatgggcacggttgagctgctcacg
cgcgaaggcgaaatcgttatcgccaaaaaaatcgaaggcggtttgcgcgatatggttcag
gccatcagtgcttgcccgatcgtggtcgctgaaatcatcgagatggcaaaaaaagtcgct
atcgatgaaatgaaaattgacgaactggtcgacggcctggtggatcttgaagccgaagag
cagatgctggccgcctctgctgctgccgcagctgctgcgtctgccgccaccgaagacgaa
gatatcgacgacgaagacgaagaggacagcggtgaagccaaggccgctgctaccgccgcc
tcgctggccaagcttaaagatgctgcgctggaacgctttgccaaaatcgaagcgctgcac
agcaaagaaattaaagcactcaaaaccaagggcacgaccgaccccaactatcagcgtgcc
cgcaaacagatttcggaagagttgctcaacatccgtttcaactcgcgcacaattgaaaaa
ctatgcgaccgcgtgcgcagcctgatggaacagattcgtcgtgccgagcgcaccgtcctg
tcaatttgcgttgacaagtgcaacatgccacgcgaccacttcatcaagaactttccaccg
aacatcgtcaacctaaagtggatcgaaaaagaagtcatgaatgccccgaagcacacccag
ggcatccttgagcgtaacgtacctgcggtgcacgaatggcagaagaagctgatcgccatg
gaagaaaatctgggcatcacgctggctgaagttcgcgaaatcaacaagcagatgaccaag
ggcgagcgtcacgcacgcgccgccaagaaggaaatgaccgaggccaacctgcgcctcgtc
atctccatcgccaagaagtacaccaaccgcggcctgcaattcctggacctcatccaggaa
ggcaacatcggtttgatgaaggcggtagacaagtttgaataccgccgaggttataagttc
tcgacctatgccacctggtggatccgtcaggccattacgcgctcaatcgccgaccaggcc
cgcacgattcgtattccggtgcacatgatcgaaaccatcaacaagatgaaccgcatctcg
cgccagatcctgcaggaaaccggtttcgaaccggatccggccacgctggccatcaagatg
gaaatgccggaagacaaaatccgcaaaatcctcaagattgccaaagaaccgatctcgatg
gaaacgccgatcggcgacgacgacgattcgcatctgggcgacttcattgaagaccaggcg
acgctgtcacctctggaggcggctatgaacgccagcctgcacgaagtgaccaaggacatc
ctggatggcctgactcaaagggaagccaaggttctgcgcatgcgcttcggcatcgaaatg
aataccgaccacacgctggaagaagtcggtaagcagttcgatgtgacccgcgagcgtatt
cgtcaaatcgaggccaaggcattgcgcaagctacgccatccgtctcgttcggataaactg
cgcagcttcgttgatacgaacaattaa
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