Fluviibacter phosphoraccumulans: SHINM1_001190
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Entry
SHINM1_001190 CDS
T07031
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03030
DNA replication
fpho03430
Mismatch repair
fpho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM1_001190 (holA)
03430 Mismatch repair
SHINM1_001190 (holA)
03440 Homologous recombination
SHINM1_001190 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpho03032
]
SHINM1_001190 (holA)
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_001190 (holA)
Enzymes [BR:
fpho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM1_001190 (holA)
DNA replication proteins [BR:
fpho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHINM1_001190 (holA)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHINM1_001190 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
PUB_1
Motif
Other DBs
NCBI-ProteinID:
BCA64517
LinkDB
All DBs
Position
complement(120020..121036)
Genome browser
AA seq
338 aa
AA seq
DB search
MNLGGTDGTSRLAAHLNGPLAPIYAIHGDDPLLVIEAADAIRAAARAKGFDEREVLTVSH
PFDWKQLAYATQGGSLFGGCKLVELRVPTGKLGRGGPEALQALLDQSGPAATDYLILMTL
HEFGWREQKTAWFQNFVSSKNAIVIPCVPPGIKALPRWLAERLARQQQSAPPDALEYIAH
HVEGNLLAANQEILKLGLLYPTGPLNLEQVRAAVADVARLDLDMLRSALLDGDLPRFSRT
LAGLREQGEALPLMLYWLSEDIRAMVQLTAPGGSPEQRLSSMRMPPQRAQQMRSAASRRT
KISWRSALESIARIDRLSKGIGQGDPWTELAALALQLC
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctgggcggcacagacggcaccagtcgtctggcagcgcatctgaacggcccactt
gcgccgatctatgccattcacggcgacgacccgttactggtgatcgaagccgctgacgcg
attcgtgccgcagcacgcgccaaaggttttgacgaacgcgaagtgctgaccgttagccac
cccttcgactggaagcagctggcctacgccactcagggcggctctttattcggtggctgc
aaactggttgagctgcgtgtgcccacgggcaaacttggccgcggtggcccggaagcgttg
caggccctgctcgaccaatcaggtccggccgccaccgattatctgattttgatgacgctg
catgaattcggctggcgcgaacaaaagaccgcctggttccagaatttcgtcagcagcaaa
aacgccatcgttattccctgcgtaccgccgggtatcaaagcgctgccccgttggttggcc
gagcgcctggcccgtcagcagcaatccgcaccgcccgatgcattggaatatattgcgcat
catgtcgaaggcaacctgctggctgccaaccaggaaatactcaaacttggactcctttat
ccgacaggtccactcaatctggagcaagtacgtgcagcagtcgccgatgtcgctcgatta
gacttggacatgctgcgcagcgccttgctcgatggggatctgccccgtttttcacgcacg
ctggcaggcctgcgcgaacagggagaagcgctgccgctgatgctgtactggctctctgaa
gatatccgtgccatggtgcaactcactgcgcccggaggttctcccgaacaacggctcagc
agtatgcgcatgccaccacaacgggcgcaacaaatgagaagtgcggcatcccgtcgcacc
aaaatatcgtggcgatcagcacttgaatccatcgctcgcatagaccgactttccaaaggc
attggccagggtgacccctggaccgaacttgccgcacttgcgctacaactctgctga
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