Fluviibacter phosphoraccumulans: SHINM1_001230
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Entry
SHINM1_001230 CDS
T07031
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03420
Nucleotide excision repair
fpho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHINM1_001230 (uvrD)
03430 Mismatch repair
SHINM1_001230 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_001230 (uvrD)
Enzymes [BR:
fpho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHINM1_001230 (uvrD)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHINM1_001230 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SHINM1_001230 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_12
AAA_30
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
BCA64521
LinkDB
All DBs
Position
125174..127474
Genome browser
AA seq
766 aa
AA seq
DB search
MNFASDHSQLSSSIPDAFGGPVGAPVGVFGTAQAHPLLNGLNEPQKQAVCLPAEHGLILA
GAGSGKTRVLTTRIAWLMQTGQVSPQGILAVTFTNKAAREMLTRLSAMVPINVRSLWVGT
FHGLCHRLLRTHWRAARLPETFQILDTGDQQAAIKRLIKAMGVDEERFPPRDMMHYINAL
KEQGIRSGQAEAHDAHTRRKVEIYAEYEAQCQREGAVDFAELLLRAYELLQQDEALRTHY
QQRFRHILVDEFQDTNPLQYAWLQLLCGPQTVIFAVGDDDQSIYAFRGADVANMRAFERN
YAKGNVIRLEQNYRSHGNILTAANALITNNADRLGKNLWTDAGEGELIRVFQGVSDLDEA
RYIVDEIRELTREGLPRHQMALLYRSNAQSRVLEHALFQAGIAYRVYGGLRFFERMEVKH
ALAYLRLIANQDDDTAFLRVVNFPTRGIGARSLEALQLEARQLNSSLYNAAASLTGKAGT
AVGQFIRMIEGLRTETTGLSLPEVIDHLLDRSGLRQHYQAEKDGQDRLENLEELVNAAAT
FADDPEAAHNIDRDTGEATSLLADFLAHAALEAGEHQAGDQDEAVQLMTVHSAKGLEFSA
VFIVGLEQGLFPHENAMMARDGLEEERRLMYVAITRARQRLYLCHAQTRMLHGQTRYCLP
SSFLDELPEALLQRINTVPAWSAGSYSTGWSEAPAVDMTTRVSARAAGAAESAGGFHVGQ
NVVHTKFGAGVILAAEGRGEEARVQVRFGQAGTKWLALAYAKLEAV
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgcgtccgaccattcccagctcagctcatcgattccagacgcctttggtggc
ccagttggggctccggtgggtgtgtttggtacagcgcaggcgcatcccttgctgaacggc
ttgaacgagccacaaaaacaggcagtttgtctgccggctgagcatggcctaattctggcg
ggcgctggttcagggaaaacacgggtactgacaacgcgcatcgcctggttgatgcagaca
gggcaagtatcaccgcagggcattctggctgtcacgtttacgaacaaagccgcccgcgaa
atgctgacgcgcttgtcggccatggtgccgattaacgtacgtagcctatgggtcgggact
ttccacggtttgtgtcatcgtcttttgcgcacgcactggcgcgctgcacgcttgccggaa
acatttcagattctcgataccggtgatcagcaggcagcgatcaagcgtctgatcaaagcg
atgggggtggatgaagagcgttttccgccgcgcgacatgatgcattacatcaatgccttg
aaagagcagggcatccgttccgggcaagccgaagcgcacgatgcccacacccgccgcaaa
gtagagatttacgctgagtacgaagcgcaatgtcagcgcgaaggcgcggtggattttgcc
gaactcctgttgcgcgcctacgaattgctgcaacaggatgaagcgctgcgtacgcactat
caacagcgattccgtcacatcctggtggatgagttccaggatacgaatccgctgcaatac
gcctggctacagttattgtgtgggccacaaaccgttatctttgccgtgggcgatgatgac
cagtcgatttatgcgttccgtggtgccgatgtcgccaatatgcgggcctttgagcggaat
tacgccaagggcaatgtgatccgcctcgaacagaactaccgttcgcacggcaatatcctg
acggcggcgaatgccctcattaccaataatgcggatcgtctgggtaaaaacctctggacg
gatgcgggcgaaggcgaactcattcgagtcttccagggcgtgtctgatctggatgaggcc
cgttacatcgttgatgaaatcagagagctaacgcgagaaggcttgccgcgccatcagatg
gccttactctaccgctccaatgcgcagtcacgcgtattggaacatgcgctgtttcaagca
gggatcgcgtatcgggtttacggtggcctgcgctttttcgagcgaatggaagtgaagcat
gcattggcctatctacgtttgattgccaatcaggatgacgacacggcctttttgcgtgtc
gtgaatttcccgacacggggcattggtgcgcgcagcctcgaagccttacagcttgaagcg
cgccagctgaatagtagtctttataacgctgccgccagcttgacgggtaaagcaggaacg
gccgttggccagttcattcgtatgattgaaggtttacgtacggaaacgacgggtctgagc
ttgcccgaggtcattgatcatctgctggatcgttcgggtttgcgtcagcactaccaggca
gaaaaagatgggcaggatcgtctggaaaacctggaagaactagtcaatgccgcagctacg
tttgccgatgacccggaagcggcgcacaacatcgatcgcgataccggtgaggccaccagt
ttgctggccgattttctggcgcatgcagcgttagaagcgggagagcaccaggcgggtgat
caggacgaggccgtgcagctgatgacggtgcattcggctaaggggctggaattctctgcg
gtctttattgtcggtctggagcaggggttgtttccgcatgagaacgccatgatggcgcgc
gacggcctcgaagaagaacgccgtctcatgtacgtggccatcacgcgggcgcgacagcgt
ctgtatctgtgtcatgcgcagacccgtatgttgcatgggcagacccgctactgcctgccc
tcatcgtttctggatgagttaccggaagcgctcttgcaacgcattaacactgtgccggcc
tggtctgcgggtagctacagtaccggttggtcagaggcgccggcagttgatatgacgacg
cgtgtttcagcacgtgctgcgggcgcagccgagagcgccggtggtttccatgtggggcag
aatgtggtgcataccaagtttggtgcgggcgtcattctggccgctgaaggccggggcgaa
gaagcgcgtgtgcaggtgcggtttggccaagcgggcacaaagtggctggcgttggcgtat
gccaagctggaggccgtttga
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