Fluviibacter phosphoraccumulans: SHINM1_001250
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Entry
SHINM1_001250 CDS
T07031
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03030
DNA replication
fpho03430
Mismatch repair
fpho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM1_001250 (dnaE)
03430 Mismatch repair
SHINM1_001250 (dnaE)
03440 Homologous recombination
SHINM1_001250 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpho03032
]
SHINM1_001250 (dnaE)
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_001250 (dnaE)
Enzymes [BR:
fpho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM1_001250 (dnaE)
DNA replication proteins [BR:
fpho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHINM1_001250 (dnaE)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHINM1_001250 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BCA64523
LinkDB
All DBs
Position
128820..132338
Genome browser
AA seq
1172 aa
AA seq
DB search
MLPDFVHLRLHSEYSITDGIVRLEKAVARARDDGQPALALTDLGNAFGLVKFYQAARKAG
IKPLLGADVWVGNPQEPDDASRLLLLCRNNEGYRQLCELLSRGALWSDRRERVVLDPAWF
GEVGCEGLVALSGAAEGDVGKAILQGRIDEAALRVTAWKKLFGTGFYLEVQRYGHPDEEI
LVAQTAQLSLDADVPLVATHPVQFVDREDFRAHDARVCIATGYTLADKRRPRVFTEQQYF
QTRADMAERFSDMPQALTNAFEIARRCNVTLTLGKSFLPDFPTPNGEGLDEFLVAEARRG
LAERMQQLYPDDAVRASRQAEYDDRLDFECKTIVQMGFPGYFLIVADFINWAKNNGVPVG
PGRGSGAGSLVAYSLGITDLDPLAYALLFERFLNPERVSMPDFDIDFCQDNRWKVIEYVR
DKYGADAVSQIATFGTMSSKAVIRDAGRVLDLPYNFCDQLSKLIPVVQNRPVSLAEALSA
EPQLQERYEREEEVKELFTLANKLEDLTRNVGMHAGGVLIAPGKLTDFCPLYTQPGGEAV
VSQYDKDDVEKVGLVKFDFLGLRNLTIIELALDYVARLTGDRPDLTALPFDDPKAYQILK
DANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGLQKI
DYFHESLKACLTPTYGVIVYQEQVMQISQLIGRYTLGAADMLRRAMGKKKPEEMAEHRDI
FREGAKQSEIDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYHTAWLKAHHASAFMAAT
LSSDMDNTDTVKIFHDDAKANGLTILGPDVNHSEFRFTPVDAKTIRYGLGAVKGTGENAV
NAIVAARKASGPFKDIFDFCQRVDRRVVNRRAMEALVRAGAFDALDPERARVLSQVALAV
ETAEQAAANEHQSSLFGMDDLSAPQTQSRPGGSEVQNYPRWSERQRLIEEKAALGFFFSS
HPFDIVRAEVRPICSTPIGKLEASRDATLVAGIVTEVRTQMTRRGKMAFVTLDDGEGRIE
AAVFSEMFDAQRHKLRMDELLLVEGKVSRDEFRDALKLGVDRLMTFNEARAQWAKSLWLD
LRGLDIRALGGVRRIYDLLQPFAQLVMDPSAVTVRGCPVSLTYSNGLAEAVFEVGDGLRV
RPDTELLDALRSLLGSERVRLDYQLGTQQRAR
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctgattttgtacaccttcgcctccattccgaatattcgattaccgacggtatc
gtccgactcgaaaaagcggtggcgcgtgctcgggatgatggtcagcccgcattagcgctg
acagatctgggcaatgccttcggactggtgaagttttaccaggccgcgcgtaaggcaggc
ataaagccgctgctcggcgcggatgtctgggtggggaatccgcaagagccggatgacgcc
tcgcggctcttgctgttgtgccgtaacaacgaagggtatcggcaactttgtgagctgctg
agtcgcggtgcgctctggtccgatcgtcgtgagcgtgtcgtgctcgacccggcctggttt
ggcgaagttggctgcgagggcttagtcgctttgtctggtgccgccgaaggcgatgtcggc
aaggcaattttgcaggggcgtatcgacgaagcagcgctacgggtaaccgcctggaagaag
ctctttggcacaggcttttacctggaagtgcagcgttatggccatccggatgaagaaatt
ctggtggcacaaacagcgcaactgtcgctggatgcggatgtgccgctggtcgccacacac
ccggtgcagtttgtggatcgagaagactttcgtgcccacgatgcgcgagtctgtattgcg
acgggttataccttggcggacaaacgccgcccccgggtatttaccgaacagcagtatttc
cagacgcgggcggatatggccgaacgcttctcggacatgccacaggcactgactaacgcg
tttgagattgcccgccgttgtaacgtgacgctgaccttgggtaagagttttctgccggat
tttccgacgccgaatggcgaagggttggatgagtttttggttgccgaagcgcgccgaggt
ttggcagagcgcatgcagcagctttatccggatgacgcagtgcgcgcatcgcgtcaggca
gagtacgatgaccgtctggattttgagtgcaagacaatcgtccagatgggcttccccggc
tacttcttgatcgtggctgactttattaactgggccaaaaataacggcgtacccgtaggt
ccggggcgcggttcaggcgcgggttcactcgttgcctattcgctcggtattaccgatctg
gatccgctggcttacgcgttgctgtttgaacgattcctgaaccccgaacgcgtatcgatg
cctgacttcgatatcgacttttgtcaggacaatcgctggaaggtcattgaatacgtccgc
gataaatatggtgccgatgcggtatcgcagattgcgacctttggtaccatgtcttccaaa
gccgtgattcgcgatgcgggccgcgtgctggatttgccctataacttttgtgatcagctg
tccaagctgattccagtcgtgcagaatcgcccggtgtcgctggccgaagcgctttcagcc
gagccgcagctgcaggaacgctacgagcgtgaagaagaagtcaaagagttgttcacgctg
gcgaacaagctggaagatttaacgcgtaacgtgggcatgcacgcgggtggggtgctcatt
gccccaggcaagttgactgacttctgcccactgtacacgcagcctggcggtgaagccgtc
gtcagccagtacgataaggatgacgttgaaaaagttggcctcgtcaagtttgactttcta
ggcctgcgcaacctgaccattattgaactggcgctggattatgttgcccgtttgacgggt
gatcgccccgacctgacagcgctgcctttcgatgacccgaaggcttaccagattctgaag
gatgccaatacgaccgccattttccaggtggaatcggagggcatgaaaaagctgctcaag
aagctggcgccggatcgatttgaagacatcattgctgtgctggcactttatcgtccgggc
ccgttgggctcggggatggtagacgattttattctgcgtaaaaaaggcctgcagaagatc
gactatttccatgagtcgcttaaggcctgcctgacgccaacctatggcgtgatcgtgtat
caggaacaggtgatgcagatctcccagctgatcggtcgctatacgctgggcgcagcggat
atgctgcgccgggcgatgggtaagaaaaagccggaagaaatggctgagcaccgcgatatc
ttccgcgagggcgcgaaacaaagtgagattgatgaaaagctggcgatgcagctgttcgat
ctcatggaaaagtttgcggagtatggctttaataaatcacatacggcagcttatgcggtc
gtgacttatcacaccgcctggctcaaggcgcaccacgcctcggcatttatggcggcgacg
ctgtcttccgacatggataacaccgatacggtgaagattttccatgatgacgccaaagcc
aatggcctgacgattttgggccctgacgttaatcattccgaattccgttttaccccggtc
gatgcgaaaacgatccgctacggtttaggcgccgttaaagggaccggtgaaaacgccgtg
aatgccatcgtggcagcgcgtaaggccagcggcccgttcaaagacatttttgatttctgt
cagcgtgttgatcgccgcgtcgtaaaccggcgtgccatggaagcgctggttcgtgccggt
gcttttgatgcgctcgatccagagcgtgcgcgtgttttgtcgcaagtggcgctggctgta
gaaacagctgagcaagctgctgcaaatgagcatcagagtagcctgttcggtatggatgat
ctttctgcgccgcagacgcagtcacgcccaggtggcagcgaggtgcagaactatccgcgc
tggtctgagcgacagcggttgattgaagaaaaggccgcgctgggtttctttttctccagc
cacccttttgatattgtgcgtgccgaagtgcgccccatatgttccaccccgattggcaaa
ttagaagcgagccgcgatgcgaccttggtggccgggatcgtaacggaggtgcgcacccag
atgacccggcgcggcaagatggcttttgtgacgctggatgatggcgaaggccgaatcgaa
gcggccgttttcagcgagatgttcgatgcgcaacgccacaaattgcgcatggacgaattg
ctgctggttgagggtaaggtaagccgcgacgaatttcgtgatgcgcttaaattaggcgta
gatcggttgatgacttttaacgaggcacgagcccaatgggctaaaagcctgtggcttgat
cttcgtggcctagatatccgtgctttgggtggggttcggcgcatttatgatttgctgcaa
ccatttgcccagttggtgatggacccttcagccgtaacggtacgtggatgtccggtcagt
ctgacgtatagcaatgggttggctgaagccgtctttgaggttggagatggcctacgtgtg
cggccggacaccgaattgctggacgccttacgtagcctgctcggtagcgagcgtgttcgc
ctggattatcaattgggcacgcagcaacgcgcccgttag
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