Fluviibacter phosphoraccumulans: SHINM1_004180
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Entry
SHINM1_004180 CDS
T07031
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03030
DNA replication
fpho03430
Mismatch repair
fpho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM1_004180
03430 Mismatch repair
SHINM1_004180
03440 Homologous recombination
SHINM1_004180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpho03032
]
SHINM1_004180
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_004180
Enzymes [BR:
fpho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM1_004180
DNA replication proteins [BR:
fpho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHINM1_004180
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHINM1_004180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
Rv2179c-like
RNase_H_2
HAMP
Cortex-I_coil
HisKA
PAS_9
CENP-H
Sos7
Motif
Other DBs
NCBI-ProteinID:
BCA64816
LinkDB
All DBs
Position
433695..435884
Genome browser
AA seq
729 aa
AA seq
DB search
MFLRDLTAKWRFVLAVGVLGLLMTGPFLLTSLLIWLGASPGMREVLVEHLLPQVPLGGML
TATGFVLGLVLIRRLFNRYVTGMAAMVEELRLMLGSNRSFRITEEGPPELRELVRAINDL
ATQRDAYIDDVESQVAKAKANVEEEKNRLAALMSELAQAVVVSNLDGRILLYNNRARFMF
ESLAKGPTSVSSGALIGLGRSITSILETSQVDYARETIRIQLERGNRHPVANFVTTTDNG
QLIRVQIAPVLRHRSEASAQQVASGYILLIENITRVLEQESLRDEVLGELTEGSRASLGT
LRAAVEMLADHPDMGAEDRDRFVGVLASEVTRMSQRLDDTLTSLSDTLRQHWPLDDMLAA
DVIEAAGRRIHERLKLPVDVNTMTEVPLWIRADSFSLVSALTFLATRIEEAGEVRSFALK
LDSDDRFVHIDLVWTGLSMSTETVLTWEIEPMRQDHGVNPPTLREVLDRHAGEIWYQRQR
TTTQASIRLLLPRATPEQDASSLAARNESADRPEYYDFDLFDRPMGQVDLDQPLSELVYT
VFDTETTGLEPANGDEIIQIGALRIVNGRLLHQEHFDQLVDPRCHLKAASIAIHGITDSM
LLGQPTIDLVLPAFHDFCADTVLVGHNVAFDMRFLELKEATLGVRFDQPVLDTLLLSAVA
HPNQQSHSLEAIMQRLGIQMEQRHNALADATATAQVFMRILPALAEQGVVTLRQALAASQ
KTYFAQVKY
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtttttacgtgatctcactgcgaagtggcgctttgtgcttgccgttggcgtactcggt
cttttaatgacgggtccgttcttgttaacgtcgctgctcatctggctgggcgcgtctccc
ggtatgcgcgaggtgttggttgagcatctgctgccgcaagtgccactgggtggcatgctg
acggcaacgggttttgtgctgggcttggttttgattcgccgcttattcaaccgttatgta
acggggatggcggccatggttgaagaactccggctcatgctcggctccaatcggtcgttc
cgcattaccgaagaaggcccgcctgaattacgcgagctcgtacgtgccattaacgatctg
gccacgcagcgagatgcctacattgatgacgtagagtcacaagtcgccaaagccaaggct
aacgttgaggaagaaaagaaccgactggccgcattgatgtccgaattggcccaggccgtt
gttgtgtctaacctggatggtcgaattctgctttacaacaaccgcgcacgctttatgttc
gagtccttggccaaagggccgacctcggtatcgagtggcgcattgatcggcctcgggcgc
tcgatcacctcaattctggaaaccagccaggttgattacgcacgcgaaaccattcggatt
cagctggagcgcggcaatcgtcaccccgtagcgaacttcgtcaccacaaccgataacgga
caactgattcgtgtgcaaattgccccggtattacggcaccgttcagaggcatcggcgcag
caggttgcctcgggctacatcctcctgattgaaaacattacgagggtgctggagcaggaa
tcgcttcgcgatgaagtactgggtgagttgacggagggcagccgcgcctccttgggcacc
ttacgtgctgctgtagaaatgctggcggatcatccagacatgggcgcagaggatcgagac
cgttttgtcggcgtcctggcttccgaagtgacccgcatgagccagcgtctggacgatacg
ctgacatcgctgtctgataccttgcgtcagcattggccgttggatgacatgcttgctgcc
gatgtaattgaggctgctggccgtcgtattcacgagcgtttaaagctgcccgtggacgtg
aataccatgacggaagtgccgctatggattcgggcggatagtttctctttagtgagtgcc
ttgactttcctggcgacgcggattgaagaggcgggcgaagtacgttccttcgcgcttaaa
ctggactccgatgatcgctttgtgcacattgatttggtctggaccggactctcgatgtca
acggaaacggtgttgacctgggaaattgaacccatgcgccaggaccatggcgtcaatccg
ccgacgctgcgcgaagtgctggatcggcacgccggtgaaatctggtatcagcgccagcga
acaacaacgcaagcatccattcgtttgctgctgccaagggcaacgccagagcaggatgca
tcaagcctggcggcgcgcaatgagtctgcagatcgcccggaatattacgattttgatttg
tttgaccgcccgatggggcaggtagatctggatcaacccttgtctgaactggtctatacc
gtatttgataccgaaacgacggggcttgaacccgcgaacggcgacgagattattcagatt
ggtgcgctgcgtattgtgaatgggcgtctgttgcatcaggagcacttcgaccaactggtg
gatccgcgttgtcatctgaaagccgccagtatcgccattcacggcattacggacagcatg
ctgctgggccagccaacgattgatctggtcttgccggcttttcatgatttctgtgccgat
acggtgctggttggccacaatgtggcattcgatatgcgattcctggagcttaaggaagcc
accctgggcgtacgctttgatcagcccgtgctggacaccctgctgctctccgcagtggcc
catccgaatcagcaaagtcatagcctggaagccatcatgcaacgtttgggtatccagatg
gaacagcgccataacgccttagccgatgccacagccacggcccaagtctttatgcgtatt
ctgcctgctttggcagagcagggcgttgtcaccctccggcaagccttggcagcctctcag
aaaacctattttgctcaagtgaagtattga
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