Fluviibacter phosphoraccumulans: SHINM1_009620
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Entry
SHINM1_009620 CDS
T07031
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHINM1_009620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpho03019
]
SHINM1_009620
03009 Ribosome biogenesis [BR:
fpho03009
]
SHINM1_009620
Enzymes [BR:
fpho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SHINM1_009620
Messenger RNA biogenesis [BR:
fpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHINM1_009620
Ribosome biogenesis [BR:
fpho03009
]
Prokaryotic type
rRNA processing factors
SHINM1_009620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
BCA65360
LinkDB
All DBs
Position
complement(958736..961378)
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AA seq
880 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVEGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEAVFVSY
GAERHGFLPFKEIAREYYAPNGEGSRAKMQETLKEGQELIVQVDKDERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRVEGDDRSELRDAMAELTVPEGMSLIARTAAIGRTAEELQ
WDLNYLMQLWTAIDSVAKDNNAPLLIFQEGSLVIRAIRDYFQADIGEILIDTDDIFEQAQ
AFMSQVMPGNVNRVKRYHDDVPLFSRFQIEHQIESAYARQVNLPAGGAIVIDHTEALVSV
DVNSGRSTKGSDIEETALKTNLEAADEIARQLRLRDLGGLIVIDFIDMESARNQREVENR
LRDALHHDRARVQTSKISRFGLLELSRQRLRPALAETSYITCPRCTGTGHIRSTESAALH
ILRILEEEAMKENTAAVHTQVPVDVATFLLNEKRADIQAIELRHKITILLLPNKNLETPA
HHIQRLRHDELNQDDMREPSYKMVDQSLAELPAYAAEQQKNQNRPTAAIRNIAPAQPAPI
SMESTTPPERVPEEKTGFITKLFSWLSGDNKKKPPVEVARPRTPREPREGARGNSRRQGA
DSEGRQARGERGPRSEGRQVRGERGERTQRGEGQEGRRNNNRGERAAAPTEGASTEDVGQ
TNAGNNRRRGGRDRRPNNTSEAPTNPVENPNLVTTEGAVPTETTGEGSNGNSRRRGRRGG
RRERGDRPQQSGEGQVDNVVEQNVDAAPVAVTAPVVSVAEAVAPVSAPVIQETAPVVAQV
VETAPQVSAPAPTPAPVVAPVAPIEAAPAPMVAPTPKPAPVVSAPVSLEAVGLQMVETDP
SKRASVAAAPAEKPVRKPRAPRVKPVVVEEPLQMVETRKE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaatgcgacgcaagctgaagaattgcgcgtcgctattgtcgaa
ggccagaagctcatcgacctcgacatcgaatctgctgccaaagagcagcgcaagagcaac
atttacaaaggcgttatcacccgcatcgaaccatcgctggaagcggtgttcgttagctac
ggtgccgagcgccatggttttctgccctttaaggaaattgcccgcgagtactacgccccc
aatggcgaaggtagccgcgccaagatgcaggagaccctgaaagaaggacaggaactcatc
gttcaggtcgacaaggacgaacgtggcaataagggcgccgccctcaccacctacgtatct
ctggccggccgttatctggtgctgatgccgaacaatcctcgtggcggtggtgtttcacgt
cgcgtcgaaggggatgaccgctcggaactccgcgatgccatggctgaacttaccgtcccg
gaaggcatgagcctgatcgctcgcaccgccgctatcggtcgcacggccgaagaactgcag
tgggatttaaactacctgatgcaactttggacggccattgattcggtcgccaaagacaac
aacgcacccctgctgattttccaagaaggcagcttggtgattcgtgcaatccgcgactac
ttccaagccgacatcggcgaaattctcatcgataccgatgatatttttgagcaggctcaa
gcattcatgagccaggtcatgccgggcaacgtcaatcgtgtgaagcgttatcacgacgac
gtgcccctgttctcgcgcttccagatcgaacatcagatcgaatcagcctacgcccgtcag
gtcaacctgccggccggtggtgccattgtgatcgaccacacggaagccctggtgtcggtt
gacgttaactcaggtcgctcgaccaagggtagcgatatcgaagaaacggcgctcaaaacc
aacctggaagcggccgatgaaatcgcccgtcagttgcgcctgcgtgacttgggtggcttg
atcgttatcgactttatcgacatggaaagcgcccgtaatcagcgcgaagtcgaaaaccgt
ctgcgcgatgccttgcatcacgaccgcgcccgtgttcaaaccagcaagatcagccgtttc
ggtctgctcgaactatcgcgtcagcgcctgcgccctgccctggctgaaacctcctatatc
acctgcccacgctgtaccggcacgggtcacattcgttctacggaatcagccgcactgcac
atcctgcgtatcctcgaagaagaggccatgaaggaaaacacggcagccgtgcatacacag
gtgccagtggatgttgccaccttcctgctcaacgaaaagcgtgcggatattcaggccatt
gaactgcgtcacaagatcacgatcttgctgctgccgaacaagaatctggaaacaccagcg
caccacattcagcgcctgcgtcatgacgaattgaatcaggacgacatgcgcgaaccttct
tacaagatggtcgatcagtcactggctgagctcccagcttacgccgctgagcaacagaag
aaccagaaccgtccgaccgctgcgattcgtaatatcgcaccggctcaaccggccccgatt
tcgatggagtccacgaccccgccggaaagagtgcctgaagaaaagactggctttattacc
aagctgtttagctggttaagcggcgacaacaagaaaaaaccaccggttgaagtggcgcgt
cctcgcacaccccgtgaaccgcgggaaggtgcccgtggcaacagtcgtcgtcaaggcgcg
gatagcgaaggtcgtcaggctcgtggcgaacgcggtcctcgcagtgaaggccgtcaggtc
cgtggtgaacgcggcgaacgcactcaacgtggcgaaggtcaggaaggccgtcgtaacaac
aaccgtggcgagcgtgctgccgccccaacggaaggagcaagcacggaagacgtcggtcaa
acaaatgctggcaacaaccgccgccgcggtggtcgtgatcgtcgcccaaacaacaccagt
gaagcccctaccaaccctgtagaaaatccaaacttggtaacgacggaaggtgctgtgccg
accgaaaccacaggtgaaggcagcaatggtaatagccgtcgccgtggccgccgtggtggt
cgccgtgaacgtggcgatcgtccgcaacagagcggtgaaggtcaagtcgacaatgtggtt
gagcaaaatgtcgacgcggcacctgtggccgtaacagcgccggtcgtatcagtggccgag
gctgttgcaccagtgagcgcaccggtcattcaggaaacggcgccagtcgttgcccaggtt
gttgaaacagcaccgcaggtctctgccccggcgccaacaccggcacccgttgtcgcaccg
gtagcgccaattgaagcggcgccagccccgatggtagcacccacaccaaaacctgcccca
gtggtatcggcaccggtttcattggaagctgtaggcttgcaaatggtggaaaccgatcca
agcaaacgcgccagcgtggcagcagcacccgcggaaaagccggtgcgcaaaccgcgtgca
ccgcgcgtcaagccggttgtcgtagaagaaccgctgcaaatggttgaaacccgtaaagaa
taa
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