Fluviibacter phosphoraccumulans: SHINM1_010310
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Entry
SHINM1_010310 CDS
T07031
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHINM1_010310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_010310 (mfd)
Enzymes [BR:
fpho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHINM1_010310 (mfd)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SHINM1_010310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
AAA_22
Cas3-like_C_2
AAA_25
AroM
AAA_16
HemY_N
Motif
Other DBs
NCBI-ProteinID:
BCA65429
LinkDB
All DBs
Position
1053490..1056978
Genome browser
AA seq
1162 aa
AA seq
DB search
MPTLPAGVLPKRLPDVGHRHTIQGVAVGAQSLLLAELALKKTQPLLVVFTADALERQRLF
EELQWLAPESRIRQFPDWETLPYDPFSPHHDLISERLATLSALQRGECDILLASVQTALH
RLPPPAFLAAHSFSFTQKQALDEPALRAQLALAGYQAVTNVISQGEFSIRGGLIDLFPMG
SMLPFRLDLFDKEIESIKTFDVDTQRTLFPVPEIQLLPAREFPTDDRSRTLFRQRFREVF
EGDPAKTGVYRDVSQGTLPAGIEYYLPLFFEDNETATLIDYLSGADATNPPLVVFTSELS
TPIQSFWQEVRSRYTFHQGEKERPLLPPESLFLNEETFFTEIQHTPRILLAAAEPNAEKN
TFLDIPAIGLDRRREDPLEAFRAFTQQHAGKILVMAETAGRRESILALLQEGGFAVHPVE
SLSAALDADDTLQLLTGPLHQGFAIPGLAIVTETELFAGTPRRKKQSRKKASADNWLRDL
TELRIGDPVVHETHGVARYQGLTHLDLGDGDTEFMVLEFANEAKLYVPVAQMHLISRYSG
GDPDHAPIHTLGSGQWEKAKRKAALQARDTAAELLALYAARASRQGHAFHFDESDYERFA
DGFGFEETIDQAVAIDAVLSDMRSGQPMDRLVCGDVGFGKTEVALRAAFAAVAGGKQVAV
LCPTTLLCEQHAENFRNRFADWPVKVVELSRFRSAKESQAALDEMADGRADIVIGTHRLI
QNDIKFSRLGLLIIDEEHRFGVKQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFS
VIATAPQKRLAIKTFVHNLSDGIIREAVLRELNRGGQVYFLHNEVDTIENMRERLTKLVP
EASIVIGHGQMNERELERVMRDFTQQRANVLLCTTIIETGIDNPHANTILINRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVQEMKGLTKAAKQRLEAIQMMEELGSGFYLAMHDLEIRG
AGEVLGDSQSGEIQEVGFALFTEMLNRAVKAMKAGETPDLSQPLGIGTEINLHVPALLPD
AYCPDVHERLNLYKRLANSDDAEELTLMQEELIDRFGSMPPQAESLMATHQVRLQAKYWG
MTKVDMSQDQIVIQFGPQTPADPMTLLWLIQNRRDLKLAGQDRIILSRHMPSLSLRIQAF
RELCSTLEKPPAALVKASNKSK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaccctacccgcgggcgtactaccgaagcgcttgcctgatgttggccatcgccac
accattcaaggcgtggccgtcggcgcgcaaagcctgctccttgccgaactggccctcaaa
aagacacaaccgctactggtggtatttaccgccgatgcgcttgaacgacagcgtttgttt
gaagagttacagtggctggcgccagaaagccgtatccgtcagtttcccgattgggaaacc
ctgccctacgacccgttttcaccccaccacgatctgatttcggaacgcctggcaacgcta
tctgcactgcagcgtggcgaatgtgacattctgctggcctccgtccagacggcgctgcac
cgtctaccaccaccggcattcctcgccgcacactcgttcagctttacccagaaacaggcg
ctcgatgagcctgcgttacgcgctcaattggcgctcgccggctatcaggcggtcaccaat
gtcatctcgcaaggcgaattctccatccgtggcggcctcattgatctgttcccgatgggc
agcatgctgccgttccggctggatctgttcgacaaagaaatcgaaagcatcaaaaccttt
gatgtcgacacccagcgtacgctgtttccggtgccggaaatccagctgctaccggcgcgt
gaatttcccaccgatgaccgcagccgcaccctcttccgacagcgcttccgcgaagtgttt
gagggcgaccccgctaaaacgggcgtctaccgtgatgtctcgcagggcacactcccggcc
gggatcgagtattacctgccgctcttctttgaagacaacgaaaccgccacgctcatcgat
tacctttccggtgcggatgcaaccaacccgccgctggtggtctttacatcagagctaagc
acaccgattcagagtttctggcaggaagtgcgttcgcgttacaccttccaccagggagag
aaggaacggccgctactacccccagagtccctattcctgaatgaagaaaccttcttcacg
gaaatccagcacacgccacgcatactgctggccgctgccgaaccaaacgctgaaaaaaat
accttcctggatattccggcgattggcctggaccgtcgccgcgaagacccgctggaagcg
tttcgtgctttcacgcagcaacacgccggcaaaatcctggtcatggcggaaacagccggc
cgccgggaaagcatcctggcgctcctgcaggaaggtggctttgccgtccatccggttgag
tcgctcagcgccgcactagacgccgatgacacactgcagctgctgacggggcctttgcat
cagggcttcgctatccctggcctggctattgttaccgaaacagaactctttgccgggaca
cctcgccgtaaaaaacaatcgcgcaaaaaggccagtgccgataactggttacgcgatctc
accgaactccgcattggcgatccggtggtgcatgaaacgcacggtgtcgcgcgctaccag
ggtttaactcacctggacttgggtgatggtgacaccgagttcatggtgctggagtttgcg
aacgaagccaagctctatgtgcccgtcgcgcaaatgcacctgatcagccgctattccggt
ggtgatccggatcatgcgcccattcacacactgggcagcggccagtgggaaaaagccaag
cgcaaagccgcactacaggcccgtgatacggcagcggaattactggcgctctatgccgcc
cgtgcttcgcgccagggacatgccttccattttgatgaaagcgactacgagcgctttgcc
gatgggttcggctttgaagaaaccatcgatcaggccgtggccattgatgccgtcttatct
gatatgcgttcaggccaacccatggatcgtctggtctgtggcgatgtgggctttggtaaa
accgaagttgccttacgtgccgcgtttgccgcagtggccggtggcaaacaggtcgctgtc
ctctgcccgaccaccctgctctgtgagcaacatgccgaaaacttccgcaaccgttttgcc
gattggccggttaaagtcgttgagctatcccgcttccgttccgccaaagaaagtcaggct
gcgctcgatgaaatggccgatggccgcgcagatatcgttatcggtacccatcgcctgatt
cagaacgacatcaagttttcgcggctggggcttctgatcattgatgaagaacaccgcttc
ggtgtcaaacagaaagagcaactcaaggcattgcgggccgaagtggatgtgctgacgctc
actgctacgccgatcccccgtacgctggccatgtcgctggaaggcttgcgtgacttctcg
gtcatcgccacggccccgcagaagcggctggccatcaaaacctttgtccacaacctctcc
gacggcatcatccgggaggcggtactacgcgaactgaatcgtggtggccaggtttacttc
ctacacaacgaagtcgacaccatcgagaacatgcgggaacgtctgaccaaactggtgccg
gaagccagcatcgtcattggccacggccagatgaacgagcgagaactggaacgcgtcatg
cgtgatttcacacaacagcgcgccaacgtgctgctctgcaccacgattattgaaacaggc
attgataacccgcacgccaataccatcctgatcaatcgtgccgataaattcggcctggcg
caattacaccagctgcgtggtcgtgtcggccgctctcatcaccaggcctacgcttacctg
atggtgcaggaaatgaaaggcctcaccaaagccgccaagcaacgccttgaagccatccag
atgatggaagagctcggttctggcttctacctggccatgcatgatctggagatccgcggc
gccggtgaagtcctgggggattcgcaatccggtgagatccaggaagtgggttttgcattg
ttcaccgaaatgctcaaccgcgccgttaaagccatgaaggccggcgaaaccccggatctg
agccagcccctcggcatcggcaccgagatcaacctgcatgtccccgccctgctaccggat
gcctattgtccggatgtgcacgaacgactcaacctctacaagcgcctggctaacagcgat
gacgccgaagagctgacactgatgcaggaggaactgattgatcgatttggcagcatgccc
ccgcaagcagaatccttgatggccacgcaccaggtacgtttgcaggccaagtactggggc
atgaccaaagtggatatgtcgcaggatcagatcgtcattcagttcgggccacagacaccg
gccgatccgatgaccctgctctggcttatccagaaccggcgcgaccttaaattggccggt
caggatagaattatcctttcacgccatatgccttctttgtccttgcgcatccaagccttc
cgcgagctttgcagcacactggaaaagccacctgccgcactggtcaaagccagcaataaa
agcaaataa
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